Clone Read LE_HBa0052M03_T7_81605

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0052M03_T7_81605
Primer
T7
ID from Seq. Facility
LE_HBa_052_M03-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
665 trimmed for vector and quality, 708 raw
Sequence
>LE_HBa0052M03_T7_81605 (raw untrimmed)
CCTGGGCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAGCAGCAGTTACCAACCAATGTCCACGAGTGTCGTATGGCCCTCGTGCAATC
TCAGCCGTATCTACATACTTGAGCAGCTTTGTTGATCGAACTGGTACTGGAGGTCCGTCTGGATATACGCCCGAGTTAAGAGCAGCAGGAAGCTGCTTTG
GTGCAGCATCTGTCTTTGTCCGCTGAGTGAAAGTAAAAGTTGTGCTGAGATTTGTTAAGAAACTTGACCTATGAGTACCCTCTGGTGTAGCTGCCCACTC
TGTCTTTCGTATTGTGCAGTTAGGAAGATAGGTGAAAAGTAGACGCAGGTGAAGCACTGTCTTAGGCCACTTCCCTTTGCTGACAAGGTGTGCACCAGTT
ACCACAAAGACGCCACTCGTTTCGCCCTGCATCCAGCTTGGATCATGCTTAACTACAGATGAGCACACGTTGGAATATCTCGGCCATCTGACAGGATCTA
AGAATTGGTCGCTAGATTCATAATCATCGGAGCCTCGCCATTGACATGGCTTGCATAAGGTTAGGTTATTAACAGACTTAGATGCCATAATGTTTGGTAA
ACTAGAAAGATGTTGTACATGTATGGCTAAGTGGTTGCATTTCTTCCCTTCTAAATACAAGCGCAAACCAATTGACGGGTTTTTGACCACTTGTAACCTA
CATATAAG
>LE_HBa0052M03_T7_81605 (trimmed for quality and cloning vector)
AGCTTAGCAGCAGTTACCAACCAATGTCCACGAGTGTCGTATGGCCCTCGTGCAATCTCAGCCGTATCTACATACTTGAGCAGCTTTGTTGATCGAACTG
GTACTGGAGGTCCGTCTGGATATACGCCCGAGTTAAGAGCAGCAGGAAGCTGCTTTGGTGCAGCATCTGTCTTTGTCCGCTGAGTGAAAGTAAAAGTTGT
GCTGAGATTTGTTAAGAAACTTGACCTATGAGTACCCTCTGGTGTAGCTGCCCACTCTGTCTTTCGTATTGTGCAGTTAGGAAGATAGGTGAAAAGTAGA
CGCAGGTGAAGCACTGTCTTAGGCCACTTCCCTTTGCTGACAAGGTGTGCACCAGTTACCACAAAGACGCCACTCGTTTCGCCCTGCATCCAGCTTGGAT
CATGCTTAACTACAGATGAGCACACGTTGGAATATCTCGGCCATCTGACAGGATCTAAGAATTGGTCGCTAGATTCATAATCATCGGAGCCTCGCCATTG
ACATGGCTTGCATAAGGTTAGGTTATTAACAGACTTAGATGCCATAATGTTTGGTAAACTAGAAAGATGTTGTACATGTATGGCTAAGTGGTTGCATTTC
TTCCCTTCTAAATACAAGCGCAAACCAATTGACGGGTTTTTGACCACTTGTAACCTACATATAAG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.985448
Expected error %
0.500086
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g14780.1 Score 146 E Value 9e-36 Identity 12.20% Align. Length 638bp (95.94%) Frame 1
68414.m01767 expressed protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g29690.1 Score 126 E Value 1e-29 Identity 12.40% Align. Length 653bp (98.20%) Frame 1
68414.m03628 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_465614.1| Score 208 E Value 1e-52 Identity 16.70% Align. Length 632bp (95.04%) Frame 1
unknown protein [Oryza sativa (japonica cultivar-group)] dbj|BAD21906.1| unknown protein [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD73817.1| Score 208 E Value 1e-52 Identity 16.70% Align. Length 632bp (95.04%) Frame 1
unknown protein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0052M03
Clone
Clone name
hba-52m3
LE_HBa0052M03
P052M03
Clone type
BAC
Contamination
none
Estimated length
66,952
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found