Clone Read LE_HBa0004B08_SP6_830

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0004B08_SP6_830
Primer
SP6
ID from Seq. Facility
LE_Hba_004_B08-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
79 trimmed for vector and quality, 1216 raw
Sequence
>LE_HBa0004B08_SP6_830 (raw untrimmed)
CCCGCAGCCTTCTTACTAATTTTCTTGTATTCAGTATGTAAGCAAAAAACTTATTTGAAGCCATAGGTGGGGATGCCTGTAAAGGGGGTGCGTTCGAGGA
GGGGGGGGGGGGGGCACCCTTTGGGGGATGCCCCTTATATCCTTGTTTCCCTGACTTTCAGTAAAAAAAACATTTGCAAAAAATTTTGACCTGTTCCCAA
CGAAAAAGCAACTAATATTTTTTCAAGCCCGAACGCCCACGCAATGGACTATGTACGCTGGTGTGCTTTAAGGACAAGAAAGGTTGGACCCCCGACTTGA
AGGTTTACCTTCCATGTGTCACCAATGACGAATGTGTTGCATTGAAAATGAGTGTTCATAATACCAACATCTCCTGTAGGATGGAGTGTAAACACTCTGA
GACTTTTTTCTTCTGGAGACGAATTGGTCTACGAATACAACTTTTTCTCACTGCCCTCCCTTTATCTATGTGGGCAAACAGGATTGAAATAATGGAGCCT
TACGACCAAAATCGAGATGGGAACATGTCCACCAAGCTACTAGAAAGAACGGAAATGATTCCCGCAGCTACATGAGCCAGAGTCTGGGAGTTAGCGGAGT
CTGCTACGCTATCATAGACCCTCTAACTTGGTTGACCCAAGTTCAACAAGATTTGCAGCTCTATTGTTGGTTTGCACCCAGAAGATCATGAAACAACAGA
CCTTGAAGAGTACCAAAAGATCGAAGGTAGCGGACTGGATGAGGCCCTTTTCCACCCCGTTAACATGACGAAGCAGCCTGTTCGACAACAAAACAAGATT
ATAGAAAAACATGGGGCACACCATCCCAATAAATTCGGGAGGCAAGGACAAGTGTCCTAACGCCATTTTAATCTATAAAAAAAATTTAAATTTTAGAAAC
TGCTCCACTAGAGTTAAGGAAATAAGGTCAACGATAAACAAAAGTTAGGTAACAAAGGTGATTGCCCCCATATCTTTGATTGAATGCATCTTTCTTTTCT
ATATCTTAACCTAAAAGAGTCATTTGAAAATAAATACTTGAAATCTTATAAATTAAAGATGGTATCTCTCCTGAAAGAGGGATATACAATCCAAGTTGAA
CAAAAATTTGATCTTTACGGACCAGATAAAACTCCATCAGACAAGGTATAAATATAAATGAGGGAAGAAAATATCTAAAAAAATAGAGAAAGAAGATAGA
GATCATTCTCATCAAA
>LE_HBa0004B08_SP6_830 (trimmed for quality and cloning vector)
TATGTAAGCAAAAAACTTATTTGAAGCCATAGGTGGGGATGCCTGTAAAGGGGGTGCGTTCGAGGAGGGGGGGGGGGGG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.878443
Expected error %
0.862241
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0004B08
Clone
Clone name
hba-4b8
LE_HBa0004B08
C12HBa0004B08
P004B08
Clone type
BAC
Contamination
none
Estimated length
119,123
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found