Clone Read LE_HBa0072I07_T7_84493

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0072I07_T7_84493
Primer
T7
ID from Seq. Facility
LE_HBa_072_I07-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
750 trimmed for vector and quality, 823 raw
Sequence
>LE_HBa0072I07_T7_84493 (raw untrimmed)
CCTGGGTCCCGCGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCAGTACTAACAACCTTGGTTAGGATGTCTGCCAGTTGATCTTTTGATCGAA
CAAATGGAAGTTTGATAACTTTGTCTTCTAACTTGTCTTTGATGAAGTGTCGATCAACCTCAACATGTTGTGTTCTGTCATGTTGGACAGGATTTCCAGA
AATACTTATTGCTGCTTTGTTGTCGCAAAATAACTTGCAGGCTGTTTTCTGAGGAAAACCGAGTTCATTTAGCAGTTTCCTAATCCATAGGATTTCAGTT
ATTCCTTTCACAATTTCTCTGAACTCAGCTTCCGCACTTGACAGGGCTACAACCTTTTGCTTCTTGCTTCTCCAAGTGACAAGATTCCCTCCTACCAAGG
TGAAGTATCCAGAAGTGGATTTCCTTTCATCTCGGTCTCCGGCCCAATCTGCATCGGTGTAGGCAATTATATCGAGGCTATCATTTTTTCTGAAGTAGAT
CCCGGTGCTGCTTGTACCCTTTAGATACCTCAGAATCCTCATTACTGCTGTCATGTGATGTATTTGAGGTAGATGCATGAATCTACTCACTATCCCTACT
GCATATGCAATATCTGGTCTTGTGTGGGCTAGATAGATGAGTTTCCCTACAATCTTCTGATATTGCTCTTTGTCAGTCGCCTTTGCCCCTTCTATGACCT
GAAGGCCATGATTTGCTACAATTGGAGTGTCAGCCGGTTTACTACCTAACATTCCAGTTTCAGTTAAAAGATCGAGAATATACTTTCGTTGGTGAATAAA
AATCCCTTGCGTGGATCTTAAGA
>LE_HBa0072I07_T7_84493 (trimmed for quality and cloning vector)
AGCTTCAGTACTAACAACCTTGGTTAGGATGTCTGCCAGTTGATCTTTTGATCGAACAAATGGAAGTTTGATAACTTTGTCTTCTAACTTGTCTTTGATG
AAGTGTCGATCAACCTCAACATGTTGTGTTCTGTCATGTTGGACAGGATTTCCAGAAATACTTATTGCTGCTTTGTTGTCGCAAAATAACTTGCAGGCTG
TTTTCTGAGGAAAACCGAGTTCATTTAGCAGTTTCCTAATCCATAGGATTTCAGTTATTCCTTTCACAATTTCTCTGAACTCAGCTTCCGCACTTGACAG
GGCTACAACCTTTTGCTTCTTGCTTCTCCAAGTGACAAGATTCCCTCCTACCAAGGTGAAGTATCCAGAAGTGGATTTCCTTTCATCTCGGTCTCCGGCC
CAATCTGCATCGGTGTAGGCAATTATATCGAGGCTATCATTTTTTCTGAAGTAGATCCCGGTGCTGCTTGTACCCTTTAGATACCTCAGAATCCTCATTA
CTGCTGTCATGTGATGTATTTGAGGTAGATGCATGAATCTACTCACTATCCCTACTGCATATGCAATATCTGGTCTTGTGTGGGCTAGATAGATGAGTTT
CCCTACAATCTTCTGATATTGCTCTTTGTCAGTCGCCTTTGCCCCTTCTATGACCTGAAGGCCATGATTTGCTACAATTGGAGTGTCAGCCGGTTTACTA
CCTAACATTCCAGTTTCAGTTAAAAGATCGAGAATATACTTTCGTTGGTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.973301
Expected error %
0.557073
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 191 E Value 5e-49 Identity 13.60% Align. Length 659bp (87.87%) Frame 2
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAD41085.2| Score 294 E Value 1e-78 Identity 19.80% Align. Length 728bp (97.07%) Frame 2
OSJNBb0011N17.2 [Oryza sativa (japonica cultivar-group)] ref|XP_472906.1| OSJNBb0011N17.2 [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAL68641.1| Score 291 E Value 9e-78 Identity 19.60% Align. Length 728bp (97.07%) Frame 2
polyprotein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0072I07
Clone
Clone name
hba-72i7
LE_HBa0072I07
P072I07
Clone type
BAC
Contamination
none
Estimated length
107,441
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found