Clone Read LE_HBa0075O13_SP6_85560

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0075O13_SP6_85560
Primer
SP6
ID from Seq. Facility
LE_HBa_075_O13-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
632 trimmed for vector and quality, 912 raw
Sequence
>LE_HBa0075O13_SP6_85560 (raw untrimmed)
GGGGGGCATTTTGTCTTGTGCAAAAGATGAGGAGGTCAAAGTTAGATAGTCAGACATGGCAGTACATCTTCATTGGATATGGCCTTGATGAATTCGGTTA
CAGGCTATATGATGAAATTGAAATGAAACTTATGAAAAACCGTGATATTATTTTCATAGAGAATCAAAGAATTTAAGATATTGACCAAGCGGAGAAGCTA
GAATCTTCAATTTTTGATAATATAGTTCTTCATGATAAAGTTCCTCACACAAGTGTGAATGATGTTGTTGGGTTTGATAATCATGGTGAAGCCCAGAATC
ATGTATTAAATTGATATGTTAATGTTTATAATAACAATGATATTGTTGTTGATGATCCTGTTGCTCATGAAGTTGTAAACGAGTCAAATATTTCGCTTTG
AAAGTCCATAAGACAATGATTTCCTTCCTCCCGTTATTCACCCAATGAGTATGTCTTACTCACTGTCGGGGGAGATCCTGAATGTTATGAGGGGGTCAGC
GAATGTGAGCACAAGGATCAATAAATTAAAGCCATGCAAGATGAGATGAAGTCTCTGCTCAAGAAAATATTTTCTCCTATTGTGAAAATATCTTCTATTC
GCAAACTAGGTTTGGATCCTAATCTTAATTTAGAGATTGAGTAGATGGATGTGAAGATGACTTTTCTTCTCGGTGACCTATAATAGTGGATTATTTTGAA
CAACCTGAGGGCTCCAAGTAGAAAGGTAAGAAAATTTTGTGTGCTACCTCAAAAGGGGTCTTTTTGTCCTAAAAACAAACCCCAAGAAAGTTGTTCAAGA
AGTTTGAATTTGTTTTGTGGGAGTCAAGGGCATGGAACACCTTCTTCAATCTTTCCTTTCTATGTAACAAATTCCTGAACAAGATTTGCCATCCTCTTGT
TTTTTGTGATGT
>LE_HBa0075O13_SP6_85560 (trimmed for quality and cloning vector)
GATGAGGAGGTCAAAGTTAGATAGTCAGACATGGCAGTACATCTTCATTGGATATGGCCTTGATGAATTCGGTTACAGGCTATATGATGAAATTGAAATG
AAACTTATGAAAAACCGTGATATTATTTTCATAGAGAATCAAAGAATTTAAGATATTGACCAAGCGGAGAAGCTAGAATCTTCAATTTTTGATAATATAG
TTCTTCATGATAAAGTTCCTCACACAAGTGTGAATGATGTTGTTGGGTTTGATAATCATGGTGAAGCCCAGAATCATGTATTAAATTGATATGTTAATGT
TTATAATAACAATGATATTGTTGTTGATGATCCTGTTGCTCATGAAGTTGTAAACGAGTCAAATATTTCGCTTTGAAAGTCCATAAGACAATGATTTCCT
TCCTCCCGTTATTCACCCAATGAGTATGTCTTACTCACTGTCGGGGGAGATCCTGAATGTTATGAGGGGGTCAGCGAATGTGAGCACAAGGATCAATAAA
TTAAAGCCATGCAAGATGAGATGAAGTCTCTGCTCAAGAAAATATTTTCTCCTATTGTGAAAATATCTTCTATTCGCAAACTAGGTTTGGATCCTAATCT
TAATTTAGAGATTGAGTAGATGGATGTGAAGA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.940863
Expected error %
0.0604993
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV88069.1| Score 124 E Value 2e-27 Identity 13.80% Align. Length 572bp (90.51%) Frame 3
hypothetical retrotransposon [Ipomoea batatas]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T02206 Score 108 E Value 1e-22 Identity 12.70% Align. Length 557bp (88.13%) Frame 3
hypothetical protein - common tobacco retrotransposon Tto1 dbj|BAA11674.1| ORF(AA 1-1338) [Nicotiana tabacum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0075O13
Clone
Clone name
hba-75o13
LE_HBa0075O13
P075O13
Clone type
BAC
Contamination
none
Estimated length
100,192
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found