Clone Read LE_HBa0102E23_SP6_86636

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0102E23_SP6_86636
Primer
SP6
ID from Seq. Facility
LE_HBa_102_E23-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
10 trimmed for vector and quality, 1187 raw
Sequence
>LE_HBa0102E23_SP6_86636 (raw untrimmed)
TTCCACACCCGGAGGGGCCCGGGGAAAGACGGCCCGGGAGGATCGCAGCGAACCAAGCTTGTACTCGCTAGCTGTTAGCGGCTCGAGGGAAACTCACTAG
GATGCGCATGTGGACAGCCCCCCGTTTGAGGAAGGAGCGTGAGNAGTGTGANAGAGAGAAACACGACNCAAGAGCGCCCTCTATGAAGAGGGGACACGTC
TGCCTAGTGCGGGGGGGATGTGTGCACTCTTTCAAGGTGCTACTTATGTCGAGAGAGGGAGTTCTGATAAGTAAAGTGACCTGCCCACGTTATTGTAGAC
GCCAGTTTAGACCTTTCCTATGGGTGGGGGGGGGGGGAGGAAATAGAGTGATGAGGCAAAATTGGTAGTGTGGAGGGAGGTTCCTTTGAAAGGTTTCTGT
CTGCTCCTGACCTCCTGTACATTTGCTCACAGCACTCTTGTAGGCATCATTGCAGACGTGTGGACTTGGAGAAGAATAAATGTAGAGGAGGAAGACACAA
ATGCGGGGTGGAGCATAGATGGACTCGCAGACACAAGAAGACAACGAGTGATCGCGCGCTCAATCCCTGACCACGAGGCTTCTCTTTTTTGTTTTGAGAG
AGGTGAGAGCAGCGAGCACCGCCACCTGTTGGGTGGGGGGGGGGGGGGAGAAAAAAAATATGGTTCTTTTATTTTTTCTTCCCCCCCCCCCCCGCCACGG
AGGAAAGCAACCGCGCCACCGCCCTACAA
AAAAAAAAAAAAGAGAGGGAGGGGGGGTGNGGGATGTGNAACTGCCTCTCTACATCGANTTCTCCGGTCGT
ATGNTTGGCAAGGATCTGGCGAGGTAGAGCGACGTGGGTGACGACGTTGTGTAGAAAGTGGGAGGTGATATGAGAAACTGATAGAGATAAAGCGAATAGA
TAGGTAGGATAAGACAGGCTGATAAGAACTAGCTAGACTCGTTGAACTAGAAGAGAAGCATGCGACCAGGGAGCAGGCAACGAAGTTGATAGATTAAGCA
TAGCTATCGTAAATGCGCGAGAAATCAGGACTTGATTATAACGGCTTTCAGAAGGAGCACGTCGCACAGATAGACAATACAGCTTCAAGACGGCATGCAC
CACCGATATTCGGAACCGACGATAGGGCGCGCGCTTACGTGAAGCCAAGGAGGTCTGTATCAGACACCGCTGCACACCGCTAAAACG
>LE_HBa0102E23_SP6_86636 (trimmed for quality and cloning vector)
AAAAAAAAAA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.423093
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0102E23
Clone
Clone name
hba-102e23
LE_HBa0102E23
C09HBa0102E23
P102E23
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found