Clone Read LE_HBa0120P08_T7_87903

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0120P08_T7_87903
Primer
T7
ID from Seq. Facility
LE_HBa_120_P08-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1904 raw
Sequence
>LE_HBa0120P08_T7_87903 (raw untrimmed)
CATAAGCTAGGTGACAGAGTGACAGGATGGATGTGAGCGCGAGAGAGCAGCAGCGAGTAGTGTGAGGCGTCAACTCTACACAGATCAGACGCACGCACGC
GCTCGGACGACGCAGCCAGGACCAGTCAACNAGCGCAGTCATGCNACATGATGAGCAGTGTCGCGATCGAGATGAGACAGACGTATACTCTCTACCCCTA
GCAGAGCTCCGATAAGTTCAGAGTGTGTCG
TACACTNGAAGCATATCNTCACACNTAANCACCNATGAGCCCNGTGACNAAGAGAGGTATANCNCCNCNT
CACTACGACATGTCTATGCTACGTGTAGTAGCATGATCGCTCTTTTGATCGTTCGTCTTGATTATATAGTGTGATACATATACTAGAAAGTATAGANGTA
CTNGCAANGATACGTACNGAGCATAGTATGGGAGTATGCTAGACAGAAGAAGCAGACATGATACGTACTCTCTAGTGTATATCAACTACGAGTAGAGAAT
AGTGTAGTGTATAGTTATGACACAGGAGCACTAGTCTTGTATGACATAGCTAGTAGACCTGTGTCTATGATTACTGATATCACGATAGCTGATAGTACGT
GCGAGGATGATANANGTNATATAGCTAGTAGCTCTTCAATCTGTGTGTCATTACTTTATATGTGCAAGTATGTAGTAGCATGATATCAGTCGTGCTTTNT
GTATACCTTATATCGTACGGAGTCACGCACCANGNAGCTCTGGCGNCGANTAGCGGTATCNCTACTCGCGTTACATTGACACNCATCTTGCCTGCTGATA
GCATTTCGCGACNCACTCTGATGCGTGCGAAGTAGATGTNATAAGATAGTATGGTGACACCACGGACGTCAGANGCGATCGTAGATACGTTAGATATGCA
ANATGTNCTATGTGCGTGCTGCTTACTGCGAAGCGCTGNGACAGGATGACAGATGACGTATTACACGATNTACCGTCGCTGTGCATGTATNCGATCTTGT
AGCGTGTGTCTATGTACTAGCAGACNATAGTGGCGAAGTGTGACACTCCAATACGCTGCGATCATGTGAGAGTAATGTAGTAGCATGTACATAGACATAG
CATANATGATATGTNTGATCATAATNTAGGCTATAACGATATGCCTACGGCNCTATACTAGATGATGTANGCACGATCGCGACAGCACGCGCGTNCATNC
ATATATGGATACGACTNACNATATGCAAGAAGATAGGCCATGTNTCAAGCTACGCAGTGATACTCATANACCTGAGNCGCGNCACNCNCTACGCTGATCT
ACGCACTACTAGTCTGACGTCACGACAGCAGCTCACNCCTCGCACTCTCGCGAGCTNACTGTTACGACGTCTATACTGCACGATAAGTGAGTGACAACTC
AATAGAGATATNAGCTATCTAGCAGCTCGTGTGACAGAGATATCGGGCACGACGGAGATCNGTGACGAGCGTGNAGATAGATGCNTCGAGACGNCTGTGT
GTNCAGACAGATGAAGACAGATATANGCTCACATCTCATATAGCGTGCCAACGTAGACTGACTACATGACGCACGACTGTCATAAGTATACCNTGTTGAA
TTATGTGTNGCTAATAGTATACGTAGACGGCAAGGAACAAGAGTACATATCGCGTGGACAGANTAACTAGCGTGAATAGCTAAGCAGGTGACACGCATGA
ANGATACTGCGACATACTACCTGCGTGATAGACTCTCCAGCGACTCACGGAGTCANTAGATGTGACACNCGGNCTCTTATGAGAGTATGTTATCGTGACA
ACGCGATGGTGCAGTATTCAAGCGATCTAGTATGATGTCAATATACACACGACTCGATGGCGTACTCAGGTTACAGACATATATGACGCGCGCGCAGTAA
CACN
>LE_HBa0120P08_T7_87903 (trimmed for quality and cloning vector)
TA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
3.47027
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0120P08
Clone
Clone name
hba-120p8
LE_HBa0120P08
P120P08
Clone type
BAC
Contamination
none
Estimated length
107,780
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found