Clone Read LE_HBa0139A12_SP6_87958

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0139A12_SP6_87958
Primer
SP6
ID from Seq. Facility
LE_HBa_139_A12-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
33 trimmed for vector and quality, 936 raw
Sequence
>LE_HBa0139A12_SP6_87958 (raw untrimmed)
CCCGAATACTTGTCAGAATCTATGAGATGAGAGCTTGGGGAAGGGAAGCCACGGTATCAGATATGAACCTTCCAATCAATAAGGGGGGCGGCACGCGNCC
CNCCNGAAAAGGAACACCCTTATGGGGGACGACNNAAACAGGAGAAAAACAAGAAAAAAAAAGGAGNACGGCAAGNGCAAAAGAGGAGGACGGCAAGAGC
AGCCACCACAACANCAACAACANAGNAGAAGACGGCAACAAGCAGAGCAAGGAAGCGCAGCAAGGAGGCCACCACACCGACAAGAACGGGGGGAAGCACC
GCCACCGCAGNCGNCAGAAGAAGAACAACAAAAGAAAAGGAGAGGAAGAGAACNCCAGGGAGAAACNNCANGGGGCAAACAGCAAAGGGAAANAACANGA
CNNGGAGCCCACCAACNCCACCCCCCACAAAACACAGAGAAGACGCGACNNCCNACGCGGAAGAGAGGAANANANGAAGAGGACGGCCACNNCCGCACCC
CCCCCGCGGGAGGACGACAAANAAACCACCAAAACCACCACAACAAACNAAGGCACGGGGGAANCAGAAAACNGCCAAGCAAAAAANCACCACCACCGCC
CAAACAGAANCCGCACCCACCCACCCCCAACCCCCCAAAAGAGCAGGCAACAACAAGACCCAGACAGCAGNGGAGGGCAAAAAACCAAAAAACAAAAAGA
AAACACAAAGACANGGCAGAGAAAACGGGGGGCCCAAAAGGGGACGGGGAGGAAAGGGAAACAACACCCAACCCACACAACGCAACCGGGCCAAGACCCA
AGGAAACCCCAGAAAAGGGGAGCAAGCGGCGGACCCCAAAAGAAAAGGCACAAAAAACAAACCACAACAAAACCCCCCCCAACAGAAACCAGGGGCAGGG
GCCAAGCGACCGAACGACACCCCCAAAAAAAAAACC
>LE_HBa0139A12_SP6_87958 (trimmed for quality and cloning vector)
GAAGGGAAGCCACGGTATCAGATATGAACCTTC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.90625
Expected error %
0.0756529
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0139A12
Clone
Clone name
hba-139a12
LE_HBa0139A12
P139A12
Clone type
BAC
Contamination
none
Estimated length
99,999
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found