Clone Read LE_HBa0139B08_T7_87999

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0139B08_T7_87999
Primer
T7
ID from Seq. Facility
LE_HBa_139_B08-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
85 trimmed for vector and quality, 744 raw
Sequence
>LE_HBa0139B08_T7_87999 (raw untrimmed)
CAATCACTACTGAGCACAACAGATACATTAGACCAAAGGAGCCCTCTTCTTAGGTTTCAGATTCCCCTCAAGTGATATAGAGAAGACCTGCATGTAAAGA
CATTATGAATATACGTCCATCGAAAATATATCAATTTAAAAGAA
TGAGAAATCTTCCAGCACATTGAAGACTTCCATGCTAACGCAGCTATAATTCTCTG
AGATGTAATTTCTTTTTTTCTGACACATAGTCTGTTATGCTTGGAAAACTATTATGAATGTGCCAAAAGTTATGCGATATAGGAGATATCTCTATGAGAT
GATAGCACCATTTTCTAACTTGGTGAGATAATCTACCATACTTTTATATGAAGATATAAATTTAATAAGGCATCAAAGCTGACCTGTGTAATAGCTATTT
AGCCCTATCACTATATCTGAATTGCGCATTCCGATGCTCTCATAAAATTCAATTCATGTGAAGCATCCATTCTCTGTGCTGTTGTGATTTAAGTGTTGAT
TCTTCTTAATCTTTTTGATATTGTATGCTCTGAGGGAGTCTAAGGCTACTGAGAGATACGTTGAGCGGGTGTGTGCGAGATGACTAGTAAGCTGTACGAC
AGATGGGACTTTATCTTGTGAGTATATTGTGTAATACGGGGTGATACCAGCGTATGAGTAATCAGTGTTGTGAGCTGAATTTCATGATTACAGTGAGTCG
ATCGATATTTTTCACCTAGTTCTAATGTGATCAGAGTCGTGGTG
>LE_HBa0139B08_T7_87999 (trimmed for quality and cloning vector)
TGAGAAATCTTCCAGCACATTGAAGACTTCCATGCTAACGCAGCTATAATTCTCTGAGATGTAATTTCTTTTTTTCTGACACATA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.901688
Expected error %
0.68121
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0139B08
Clone
Clone name
hba-139b8
LE_HBa0139B08
C02HBa0139B08
P139B08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found