Clone Read LE_HBa0007F03_SP6_91252

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0007F03_SP6_91252
Primer
SP6
ID from Seq. Facility
LE_HBa_007_F03-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1569 raw
Sequence
>LE_HBa0007F03_SP6_91252 (raw untrimmed)
AGTATAAGAGTGCTGTATGCAACGAGGACGCGCCACAGGATATATCTAGTGTTGTACTACAATCTTTGAGAGTGGAATCAAANGAAGTTTGATTACCAGG
CGTGCCGAAGCTGGTGCATGTNATNANTGACGCCGCAGGNATTACAGCAGCACCCCACTCCCATTTGTGGATACGACCANCTCATGGTCAACTACTANTA
CATGTAAACTNATAAGCGTCTAGGCGGTGCTGTGCCTCTTCTTACGAACAGAGAGTGACGGACTAACACCACGTTAGGAGGGTGGGCAACGGACACGATA
ACATATCGTACCGGCGATACGCGCCGGAGTACATAAGATATGACGTTGTAACGGCACTGTTAGTCACCACGTGTGCAGGGTGCCGCCCGCCGTCTATGGC
CGTCTATATTGACTAGGTTTNCTTACTTGATTCTGTGACATGTGCTTTCTATANATAATCTGTACTCTGCTCTCAGTGCTCGTTGCGATGCCACCTTGCT
GCGTCCCCTACTGGCGCTACTGCNCTTCCACATTGCTCATCCACATCACCATACNTCTCGTACACGTAAGACGATGAATGCTAGTCAGAATGCGACAGAT
AGTGCAANAAGANTAGTCAGCATGCTTGACGTCCGACAATCTTACTGCTCGACCTCTCNCGCGCAAATCCACCGAGCACACTAANACTGCCACGACGATG
GACAACACTGAACACGGCGCGTGACACCCATACGCAAACGCAGACTGAAGTGATGCAACGCCAACCTCCTGCGACCCCGCCCGACTACACTCCTACCGAC
GATACGTCTTCGACTTAACCGCATCCACGAAGTCCTACCCACTCATCACGCATCTATCATCATGAGCATGAGGCGTGTATGGATAGAGACGACATGAACA
GGGCAACGATCGCGAGACGACCACCTGACACAANCCACGNAGCACGGCAGTNTCTATNTACCGCANATCACGGCNGCCCGCCCCACCTTGCACCACCCTC
TCCGCACAGACGCGACCACCCCGCACACGACTCGCTCATCTCCTNANGCTATCTCCNACTCTTACCCGCCACATCTATCTCAGAGCTCACACGGCCTCCT
CCATGGACCGCANNCNTACACCGGCTTCTTCCTACATATCCTATATAACTGTTCTCCGATCTTCGCCGCTCCACACAACGTCGCTCCCTCTTTCCCTGCT
ATTCCACTTCTCATCTACCAACTGCTACACCTCNCTCATCTCNCACGCTCAGTCAGTCACCGTTAATACACTCGCTTACTCGACTNATCATATAATATCT
CTCACTACNTTCNACATCATCGCCACACCCCACCAACACCACCGCGCCTCGTCCAGCCCCCGCCGTCCGCTGCCGCCACCGTGGTGCATANGCCGTGNCG
TATG
AGCGCGTGTCTAGGAAGATTCATGCTTGTNCTTGTTGTNGTGGNGTAGATTGATTATCCTAATGTATGTAGTGGATGAATATGATATACTGTATGN
CACAGCTTTTGTTTTTATATGTCTATTGATCTTNATACTATGTCGTTACTTTTNGTCTTCATATGCTGC
>LE_HBa0007F03_SP6_91252 (trimmed for quality and cloning vector)
AGC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.585678
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0007F03
Clone
Clone name
hba-7f3
LE_HBa0007F03
P007F03
Clone type
BAC
Contamination
none
Estimated length
150,913
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found