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Clone Read LE_HBa0007H24_SP6_91390

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0007H24_SP6_91390
Primer
SP6
ID from Seq. Facility
LE_HBa_007_H24-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
46 trimmed for vector and quality, 764 raw
Sequence
>LE_HBa0007H24_SP6_91390 (raw untrimmed)
CTTTTCCAGGGGACTGTAGTTGCCACTAAAACTCACCTGTAGTGGCGACATTATAGGTGTAGCGGCGACTCCTTTTAAGGCCCCAAATANATTTTTAGTG
GNGATATTTTAAGCCTTTAGGGGAGTATTGTTGNNANTAAAATAAATTTTTAGTGGNGATATTTTAGGTTTTTGGGGTGAGTTNTGTTGTTANTAAAGTA
AATATTTAGTGGTNANATATTTAGGTTTTAGGGGTGAGTTATGTTGAAATTAAAGAAAAAATTTTGGTGATATATTTAGGATTTAGNGGAGATTTTTGTT
GTTAATAAGGAAATTTTTAGTGGTGATATTTTTAGGTTTTTGGTGTGAATTTTGTTGAAAATAAAGTAAATATTTAGTGGAGGAAANTGTTGTTAATAAA
GNAAATTTTTAGTGGTTATATATTTAGGTTTTAGTGGTGATTTTTGTTGTGATAAAGTAAAATTTTAGTGGTGATATTTTAGTTTTTAGTGGTGATTTTT
GTTGTTATTAAAGTAAATTTTTAGTGGTGATATTTTTAGGTTTTTGTGGGGATTTNTGTTGTAATGAAAGTATATTTTTAGTGGAGATTTATTTAGGTTT
TAGTGGTGATTTTTATTGTGATTAAAAATAAATTTTTAGTGGGGATGTTTTAGGTTTTTGTGGTGAATTTTGTTGTTAATAAAGAAAATATTTAATGGTG
ATATATTTAGGTGTGGTGAATTAGGTTGGTATTTAAGGATAATTTTAGTGGAAATATATTTAGG
>LE_HBa0007H24_SP6_91390 (trimmed for quality and cloning vector)
TTGCCACTAAAACTCACCTGTAGTGGCGACATTATAGGTGTAGCGG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.883555
Expected error %
0.372938
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0007H24
Clone
Clone name
hba-7h24
LE_HBa0007H24
C07HBa0007H24
P007H24
Clone type
BAC
Contamination
none
Estimated length
112,416
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found