Clone Read LE_HBa0004D04_SP6_918

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0004D04_SP6_918
Primer
SP6
ID from Seq. Facility
LE_Hba_004_D04-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
701 trimmed for vector and quality, 1194 raw
Genbank Accession
Sequence
>LE_HBa0004D04_SP6_918 (raw untrimmed)
CCCCTAACTTGGACATAATGTTTGCCTCAAATTGAGACTTGAGACCTTACGATTTTATAGCACGCCACACCGTTCGTTTAGGAAATATCCATATAACCAC
TTCAGCTCGGATCAAAACGTAACACAACAGAACAAAAGGACACAATCTCATTTCTCCTTTATCCTTAGCTATTAAACAGAAGAGCATGTCAACAACTTTC
TACCTTAAACATCGAGATCAATTACTCAAACTGAACTTAGCAAGGAAAAGCATGAGCTTGTGAAGGTGCTTTCCGCGCATAGACAGCACTTCCACCTGTT
GTTATTAGCAGTTAGCACTCATCAGCATAATACAACTCAACTAGTAAATTAACTATAAGAATTGCAAAAGTACAATTCTCTAATTATGAATGATCAAATA
CAGGCAGCTCCACAGAATGTAAGGCAAGAGGACATGATGTTACTACTAAGTTAGCCAGAATTTTTTCCTCACTACCAACTTCCCATCAAGAGCCTCTATT
ACTCAAAACACACAAGCACATAAATATCATCTCTCTTATCACAAATGCACATGAAATGCACACTGACAAGTAGGAAATCTAAGCCATTTACTAAGCTTTG
CTCACCCGACACTGGTGCGGCTTACTGCACCAAAAGTTTCACTGTACACATCTATGGTTCATACCTGGTGAAGTCTACGCAGAATTGAACAATTTTCTGC
CTCGACACTTAAAAACATATCCAGTATTATTACTGAAGCCTCGAGCATGGAAAAGCAGTAGCTTGGAAAATGCTTTCCCCCCCAAGACAGCACCTCCTCC
AACAGCAATTATATTAATCACTAAAAGGCTATTTTCCTAAATGACACTATTCAACCAGGGGGAATAATTACAAAAAACGATGGATTTTCTCCCCTCCTTC
CTCCCACAAATCTTCAAACTAGTAAATTAAAAAAAATCTTTTCGCAAATTTCAATCAAAAAAGAAAAACGGCCAAAAAAATCACCCTTTTTAAACCAAAT
ATTTTTTCCTTTTGGGAGGAATGTTGCAAAAAAAAAGTGTGAAAAATTTTTCCCCACTAATTCCCTCCCGGACATCCCCATAATAGGGGGATGATTTATA
ACTGCACCATCAACCTGTCCAATTTTTTTATAAAAAATAATAAGAAACGGTCACCAAACAAAGAAAAATAGAGGACCCGGTAAAATGGGGGTGA
>LE_HBa0004D04_SP6_918 (trimmed for quality and cloning vector)
ATTGAGACTTGAGACCTTACGATTTTATAGCACGCCACACCGTTCGTTTAGGAAATATCCATATAACCACTTCAGCTCGGATCAAAACGTAACACAACAG
AACAAAAGGACACAATCTCATTTCTCCTTTATCCTTAGCTATTAAACAGAAGAGCATGTCAACAACTTTCTACCTTAAACATCGAGATCAATTACTCAAA
CTGAACTTAGCAAGGAAAAGCATGAGCTTGTGAAGGTGCTTTCCGCGCATAGACAGCACTTCCACCTGTTGTTATTAGCAGTTAGCACTCATCAGCATAA
TACAACTCAACTAGTAAATTAACTATAAGAATTGCAAAAGTACAATTCTCTAATTATGAATGATCAAATACAGGCAGCTCCACAGAATGTAAGGCAAGAG
GACATGATGTTACTACTAAGTTAGCCAGAATTTTTTCCTCACTACCAACTTCCCATCAAGAGCCTCTATTACTCAAAACACACAAGCACATAAATATCAT
CTCTCTTATCACAAATGCACATGAAATGCACACTGACAAGTAGGAAATCTAAGCCATTTACTAAGCTTTGCTCACCCGACACTGGTGCGGCTTACTGCAC
CAAAAGTTTCACTGTACACATCTATGGTTCATACCTGGTGAAGTCTACGCAGAATTGAACAATTTTCTGCCTCGACACTTAAAAACATATCCAGTATTAT
T

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.954159
Expected error %
0.413143
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0004D04
Clone
Clone name
hba-4d4
LE_HBa0004D04
C03HBa0004D04
P004D04
Clone type
BAC
Contamination
none
Estimated length
130,926
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found