Clone Read LE_HBa0029D02_SP6_91922

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0029D02_SP6_91922
Primer
SP6
ID from Seq. Facility
LE_HBa_029_D02-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
224 trimmed for vector and quality, 790 raw
Sequence
>LE_HBa0029D02_SP6_91922 (raw untrimmed)
GGAATAATATTTTATTTGACACATGTACCTTTAACTTGTTTCGTCCCTTCCATACTTCTACGCTAAGACTTAGCGATAGCAACAACACTTATTATTAAGC
AAGAAAACACTAACAATCTTTACATCTTACATGTACTATAAGTCAAAAGTTGAATTACACAAATATTTTTTAACTATTAATTTATTTTTTCCTGAAATTA
TTTAAAATATTATTTTTTCATTTGATATTTATTTTGATATTCAATGAATTTTTAACGGGTTCGTATTATGTTAATTAATACTCTTATTTTTAGCCAGACT
TACTATTCAATACTCATTATTAAAGTGTAAATTATTATTATGATGAAAAAATCAATCAACCTTTACATCTTCCACATAGTAATAAGGATGATATATTATA
ATTATAATTACCCCCCCCCTCTCTAATTATTAGTCATAATGAAAAAGAGAAGAGAGTTAATATATTTGAATTGTTTTACTTGTTTTATCTTTCAGATGAC
GATTTTACTTCTATATTAGATTAAATGGCATATAGTGTATAAAATATATATAGGTGATAGTTAATAAATAACATTATATTAGTATACATAATTTTTATTA
CCACAACCTCTCAATATTATATATACGATGTATCCCTACTACTTATATCTTGTGAATTTATAGCTTGTGTCGTAAGATATCAAAGGATATATATTTTATT
ATAATGTGTTATGCTTGTATCTTCATAAGGACCTTTGCACTTATGTACCTCATACTTTTGTNATGGACATTGAGACTTGTGATCGCATGT
>LE_HBa0029D02_SP6_91922 (trimmed for quality and cloning vector)
CAAGAAAACACTAACAATCTTTACATCTTACATGTACTATAAGTCAAAAGTTGAATTACACAAATATTTTTTAACTATTAATTTATTTTTTCCTGAAATT
ATTTAAAATATTATTTTTTCATTTGATATTTATTTTGATATTCAATGAATTTTTAACGGGTTCGTATTATGTTAATTAATACTCTTATTTTTAGCCAGAC
TTACTATTCAATACTCATTATTAA

This is probably not a useful sequence.

Problems:
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.824059
Expected error %
0.749039
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0029D02
Clone
Clone name
hba-29d2
LE_HBa0029D02
C08HBa0029D02
P029D02
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found