Clone Read LE_HBa0038A12_SP6_92566

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0038A12_SP6_92566
Primer
SP6
ID from Seq. Facility
LE_HBa_038_A12-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
59 trimmed for vector and quality, 829 raw
Sequence
>LE_HBa0038A12_SP6_92566 (raw untrimmed)
GCTATTCTCATCTTGCTAGGTTTAGAATCATTTCTTTCGTTAAGAAACAACCACCAATGCACAAATCCCTGAGCTTTTAGGGGACGACAAAGNAGCNCNC
CCAACCAACNGAACCCCTTAATCGGCGAGGGCNNANGANCAGAGNAAGAGANNGAAGACGAGNANGAGNANGAACNNCCGCNGANGGAAACAAAGGACAA
CNAGGNNAAGCNNCAACACAGAGGCNAAGNNCNNCAAGAANCGCAAANCNCCACCNGANCCNNGGANNCANANCANCCACAGANANACGANAAGGGCAAA
AGGNCNNCAAGNNCNCNAGCANACNGGNNNAACANNCNNCAAAAANCCCAGGCCACGAAAAGNNGGNNNACANNCAAAGGCCNCAGCNNCNNCANNNNCC
AGAAAGNNGCAGGCGANGNCCNAAANANANNAGANGAACGAACCACNAGAGNNNGAAGAACCAAAAGGGGAGANANCCAGNNGAAANCAAAANNNNCAAC
AGAAANNCCNAGGNGAGNCAGGGANNGNACNGCGGNAGGCCAAGAACNNGGCAGAACCNCANAAGGAAAANGCAACACCCGAACAAGNNNNAACNNAACA
AGNAAAGGGAAAGGANNNGANNNNNNCCANGGGNNGAACANNCAANAAANNCCAAGGANCNNAAAGACANNCACCAAAACACNNNGAACNNNCCNNAGAC
NCAAGCANNGGAACCNNANCAAACNGANANNCGAAANGANCNAANGGNNNAACAAGANCANCANGAAAAAAAACACANAACCGGGAGGNCAAACAACAAA
AAAGCCGACAGGGAACGGAAGGGCACGGG
>LE_HBa0038A12_SP6_92566 (trimmed for quality and cloning vector)
CTTGCTAGGTTTAGAATCATTTCTTTCGTTAAGAAACAACCACCAATGCACAAATCCCT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.866525
Expected error %
0.148388
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0038A12
Clone
Clone name
hba-38a12
LE_HBa0038A12
P038A12
Clone type
BAC
Contamination
none
Estimated length
105,166
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found