Clone Read LE_HBa0043I09_SP6_93712

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0043I09_SP6_93712
Primer
SP6
ID from Seq. Facility
LE_HBa_043_I09-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1300 raw
Sequence
>LE_HBa0043I09_SP6_93712 (raw untrimmed)
CGCGGTGGGTTTTTCCTCGGGACCGTGTCTGTCTGGTTCCGTCGGTTTCGCGCTTTTAATTTTGAGTTCTACATCTGAGTATAAGCTAACATCTCTCGAT
GGGATGTTTAGTGCCCGCCACCCAAAGAAGAATCTAGGTGTAGGTTAATTATGGTTAATGTTTGGGAGGGAGGGGTCGCCTCTAACAAGAAGTGTGCTTA
TTTGGGTGTTATTAAGTGTGTGATAAGTGAATGTTTTAAGGTTTTTAGATATGTATTTTGAGAATTTTTTGNTTGGGAGATGTGGTTTTGTGGAAGAATA
GATGTAGGAGTGTTTTGTATGTTTTTTGTTATTTTTGAGATTTTTGTGGAGGTGAATAAAAGGTGTTAGAGTTGATTTTTTTAGATGTTTTGTTTGTTGT
TTTGATGAGTGTTATATGTGNTGTAGTAATGTTATGGGTGTGTTGTAATAGAGATTGGAGTATTGTTTTGAGAGGTGTGAGGNTTGTTTGATGAGAATAT
GATATATTGGTTATTATGTTATGTGAGATGTGGTGTTGTTGTGTGTGGGGTAGTAGTTNGTTGTGTTGTGATTGTTGTATTTTTGTGTGTTATGATGGTT
GATGATTTTAGGTTGTTGTTTTTTGTGTTTATTTGTTTAGTTTATGTNGTTTGTGTGAAGTGGGAGATTGTGGGTGTTGGTGGTGTGTTTTGTGTGTTAG
AGTTTNGTAGAGAAGTGTGTTTATGTGTGTTTGTTGTTTGTGGTTTTGTTTGAGTTTTGGTAGTGATTGTGTGGGATTTTTGAAAGATGTGTGATTGTTT
GTTAAGGTTAANTTTTTGGTTGAGTTATGTTATATATGTGNGTTGAGTGGTATGGTATATTGTTTTTTTATGTTATGTATGTGTTTTTATTATGATTTGT
TTTGGTTTGTGTTTTGGTTTGTGATGAATATTTGTATGTATATTAGATGTTATGATGTGATGTTGGTTGTTTTTTTGTGTATAGTATGTGTGTAAGTGTG
TGTTATGTTTTGTGTTATAATGTGTGTTGGTAGGTGTAGATGTATTATGNATATTTTGTGGTGTTTGTTTGTTTGTTTTGTGAGTTGTNTGTGGTTGATT
TGTATGTTTGTATGGTGTTGTGTTGGTGAGTTTTTGANGTTTTNTGTTGTATTGTATATGTTTTGGTTTATGTTATGTGTTATTTTATAGATGTGTTGGG
TGGTT
ATTTTGTGTTGATGTTTGGTTTGGANTTGTTTTTTGTTTGTTTGTGTNATGGTTATTAATGTGAGTGTGTTGGTGTGTGGTGNTGGTGTTGTGTG
>LE_HBa0043I09_SP6_93712 (trimmed for quality and cloning vector)
AT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
4.02164
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0043I09
Clone
Clone name
hba-43i9
LE_HBa0043I09
P043I09
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found