Clone Read LE_HBa0046M03_SP6_94660

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0046M03_SP6_94660
Primer
SP6
ID from Seq. Facility
LE_HBa_046_M03-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
6 trimmed for vector and quality, 1122 raw
Sequence
>LE_HBa0046M03_SP6_94660 (raw untrimmed)
CCGAGCACACACAAGAGGGGACTAAACAAAAAGGGAAAAAAAACAAAAGGCCACCAACAGCCCCCTCCAAAGGAGAAAAAAAACACAAGACGCACAAACA
GACCCCCCCCCAATAAAAACCCCCCACCCCACCACCAACAAACACAAGCCACAAAAAAAACCCCCAATAAAAAAAGACCCCCACACACCAAACAAGAGAA
CGCCCCACCACACACGGACAACCACACCCACGAACCACCACAACAACAACGACACCAAACCAACACCCCAACACCGCAGCCACAACGACAAAAACAAACA
CCCACAAGGAAGGACACAAAGACCACCACANCACACCACACCCGAACACAACAAAAGAGACCCCCAACCCAAACCACAACCCCANAACAACCCACCACAC
CCACACACCACAAAAACACAAAACAAAACAAAAACAACCAAAACCCACACACAACCAACAAACCAACAAACCAAACGAAACAAAAACACCCCACACACCC
CCACACCAAAACCACCCACCCCAACCACACAACAACACAACAAAAAAGAACGACCAACGCCACACCCACAACACCACACCGCCACCCACAACAGAACGGG
AGCGACGAGAACACAAACCAACAAACAACACAACCCCCAACCCCCAAACCCCAAAAACACAACCCACACCCACNCCCGCCCAAACAAACCCCGCAAAAAA
CANACCAACACACGAACCAACCACAACACAACAACACACACCACACGCAAAACAACACAAAACCACACCAACAGCAACAACCAACCAGACCCACCACCAC
ACAAAACACACAAAACACAACACAACAACACCAACCACCCCACAAAACACCCCAACAGACACACACCAGAACCACACCCACAACCAACCCCAACACACGC
ACACANAAAGCACCCGACACCGCACAAACAACACCCGCAACACAACCCACACAGCACACCACAACAAAACCAAAACACAACCCGGCCCACACGGCAAAAA
CACCNACCAAACCCAAAACAACCAAACCACACAAACACCACCCCCCAACCACCCAACACACAACACACAAAAACCGACAACACACACCACACAACCCCAA
AACCCACACCCGCCANCAACCC
>LE_HBa0046M03_SP6_94660 (trimmed for quality and cloning vector)
AAAAAA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
2.41513
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0046M03
Clone
Clone name
hba-46m3
LE_HBa0046M03
C03HBa0046M03
P046M03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found