Clone Read LE_HBa0108F01_SP6_95856

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0108F01_SP6_95856
Primer
SP6
ID from Seq. Facility
LE_HBa_108_F01-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1136 raw
Sequence
>LE_HBa0108F01_SP6_95856 (raw untrimmed)
CGCCGGTCTCTGTCGCACGCCGGGACCCGGTCCTCCCTCAGACGAATATGCGCGCTTGCAGAGTGCGATTCTGCCCGCGCGGATTGGTGGCACGCAGTAG
CCGCTGTGACGGCGATGATTAGAACGCGGTGGGATGCTACTGCGTGGACAGGTGGATCACTTGACTTATGGTAACCAGTTGCCCTTTTGGTGAGCTACAT
CTGGGAACGAGCAGAAGTGCTAGAAGGTAGTGTTGCATACAATGCAGTACGTGCGTGGACATTGTCATACATTCTCTGGTACTCACGGCCACACCGACAT
GGTGACAGTCCATCAACTCATAGTGCGTGAGATGCGCTTTGGCAGCCTGCAGGAATTCTCTCTGTGCTCCAGCGGGTAGCTGATCTCCGTGATCTCCGAC
CCTCTATACCTGAATACGTTAGGTATATGTATCGCCCGCGCGCGACCACGCACATGACCACGCCGTGCCTAGCGCCACCTGCCGATGCAAACCGCGCACA
CGCACCGCCCCTAGTCATCTGCAATTTCAAAGCTTTGACATCTGTTCGCTTACGATGGCTGATCTCTCACCGATCCAATCTTGTACTATTGGTATGATTG
CTATTTTGATATTTATCAGGCACAAAATCTTCACTTATGACAGAGTTGTTGGCTCATTTTTTTGTCCTCTTGTCGTGTNTCCACAGAATGTACTCATCTT
AGCCAGTGCTGTTTAACGTTCGTTGATGAGTGTGGTTTCAGTATTCTTATGTCTGTGAGAGTTAATTTAGAGTATTATATCTTGNAAGGAGTATCATTCA
AGACTTATGTTAGTTGCTTTAACTGATTCGGAACTCTTGTCGTACCATAGCCACCACGCCCCTAGTCCCTAAATCTGCGTCCGCCGCGCTGTACCTAGAC
TATCATTCTAACTGAGAAAGTACTCTGTTCGACTTGTTCTGGTTGATGCTTCTCATGACACATTATCAGCCCTGCCTACGTGCTACGGATGGGTGAAGAG
TGTTGTCCGATGTGGTCACATGTTCCCGTTCCATCTCTCGTTTCTCACAGCTGCTCA
CTATTTCCTCTACGCCTCTTTGGTGTCGATTTGGGCTAAGAGG
ACTATATGCTGGAGATGGAGTTGGGATTAATTTGTA
>LE_HBa0108F01_SP6_95856 (trimmed for quality and cloning vector)
CT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
3.47027
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0108F01
Clone
Clone name
hba-108f1
LE_HBa0108F01
P108F01
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found