Clone Read LE_HBa0108K21_SP6_96136

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0108K21_SP6_96136
Primer
SP6
ID from Seq. Facility
LE_HBa_108_K21-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
0 trimmed for vector and quality, 829 raw
Sequence
>LE_HBa0108K21_SP6_96136 (raw untrimmed)
AGTCCGCTCCTCGGGCCGTAGCGCATGCNGTCNATCTANANGATCCCNGGTACCGAGCTCNAATTCNCCCTATANTGAGTCGTCTTTCATGCACTGGCCG
TCGTTTTACAACGTCGTGACTGGGACTTTCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGC
CCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGCGCCTGATGCGGTATTTTCTCCTTACGCATCTGTGCGGTATTTCACACCGC
ATATGGTGCACTCTCAGTACAATCTGCTCTGATGCCGCATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGAACCCCTTGCGGCCGCATC
GAATATAACTTCGTATAATGTATGCTATACGAAGTTATTAGCGATGAGCTCGGACTTCCATTGTTCATTCCACGGACAAAAACAGAGAAAGGAAACGACA
CAGGCCAAAAAGCTCGCTTTCAGCACCTGTCGATTCCTTTCTTTTCAGAGGGTATTTTAAATGAAAACATGAAGATTAAGACGAAAAAGAACAGACACGC
CATTAAACCGGAAAACTGTCTTAAATAGCGCAAAACCCTCGAGGTCGCTCTCCCCTTAAACTCGGGCTGATTCACCTCACAAGTATCGCTTAAATGTATA
ATGCATCAAACCTTTCCAAATCACAAACGGGCGCTGGAGGCCAATAAAACCACCATCTTATGTATCCATTTACGAACTCAGGGTATTCTGAGTATCGGGC
ATCCTGACTCCATCCTTACAGTTCATTCC
>LE_HBa0108K21_SP6_96136 (trimmed for quality and cloning vector)

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Probable foreign DNA contamination
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
3' read, short insert
Quality trim threshold
14.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0108K21
Clone
Clone name
hba-108k21
LE_HBa0108K21
C03HBa0108K21
P108K21
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found