Clone Read LE_HBa0108N23_SP6_96284

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0108N23_SP6_96284
Primer
SP6
ID from Seq. Facility
LE_HBa_108_N23-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1646 raw
Sequence
>LE_HBa0108N23_SP6_96284 (raw untrimmed)
CGCCGCGCCGCGGACGACGCGGGGCCAACCCGGCGACCGCCCCTCACGCTTTNTTNTNTTTTNTNTCTCTNCCTTNNTTTNNTNNTTTNNNNTTNNNTTN
NTTNNTTCCTTNNNTTTTTNNTTTTTTCCCTTTTTTCCTNTTNTCCCCCCTTTATAAGAAANATCTCNNCCTNTANTAACCTCCTTCTACCAATCATACC
ACCNATACAATAAAACAAACCCCTTATTTACANACACACACAACACCCAATNAACATCTACNATTACACTCACAAACAACCTATAAATCACACCTACTAC
CCACTNTCCACNCACCAACACTNCCTCTACACTAACCTAACACCCACACACCNACAACACTCTCACTACAACCCTAAAACCACACACAACANCATACCAA
ACAATACANACATANCTATAAACCTACACCTAATNATCTATACAACATATCACAACAACTTCACATAAANACCNCACACACATTCTACAACACATCATTA
TCACCCCACTCCTTCACCCTCCTAACTCTCCACTACCCTCATCNATACCAT
ACACACTACATATCAAACATAACCACACAACANACAAATAAATCATTAT
ATACAACACTCAANCACCATCACACAANCAAACCCTCCACTACACTTTCCATNAACCTACTACTACCACCACAACAACTCCTCATCACACTACCATCACT
ACTAACTACCTTACACCATTCCTACCACACCAATATCANTACACACACCCAACACTCCTCACCAATACCACCAACACANACCTACATCACCAATCTNCAA
ACCACCCTAANNCNACANCCACACCACACCACACACCAACATCATTACCAAATATNAAACACACTAATAAACATANACCACATCACTAACATTACAAACC
TACACAACCCATATANTCTCAACCCAAACACACACCCCATTCACTCATCTACATATCAACAACCCTNCCTCATATACCACACACTCAATATCCACACCTA
ANCTACATNAAATANCATTCCACAACTACATCACACNACNACACTACAACCATTAACTACCTCACCTCATCTCACCCACACACCACTATNATTCCCTAAA
CACACACTCCTACTATTATTACACACACCCTCACTACATACTTCCATNACCACTACTACTACTACACTTCACATCATANCACTATANNCCATACCACAAA
CACACAATTAAACATAACACAAATCCATACAATNCATCCTACACACTATCAACTACTCTCTTCCAAATTCAACAAACTAACCACACACATATTNACTCTA
CCTATTATNCTACATACAATACACTAAACACAAACAATCNACATACTACAAATAACAACACACTACTACNCACAAATCACATCAAACTCACAAATACATA
CACCACTCATCTNCTCAAACAACAAAAACTACTACCTATACACAAACACACACTACATCACCAACCACTCTACACTCACCCCNACACACATCTACACCCC
CATACACNCTCACTTTNTCTATCNACNATACCACCNCATCNCTCCCACCACANCACACTACACACTACACTACTACTCNTCAACTCACACATACCACCTA
TCAAACAACATCCCTNACACACCNCATAATACATACCTNACATNAN
>LE_HBa0108N23_SP6_96284 (trimmed for quality and cloning vector)
ACA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.47473
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0108N23
Clone
Clone name
hba-108n23
LE_HBa0108N23
C03HBa0108N23
P108N23
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found