Clone Read LE_HBa0109C03_SP6_96484

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0109C03_SP6_96484
Primer
SP6
ID from Seq. Facility
LE_HBa_109_C03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 1250 raw
Sequence
>LE_HBa0109C03_SP6_96484 (raw untrimmed)
CACTTTGCCGACGCGCCGGTTTTCGCGGATTGAGTCCTCACCATTTGTAGNGGAAAGGATGAATAAGCCTACAGGCCATTATATATCATCTTCCTCAAGT
TAAGTGTATAATCTCACTTATCTATTATCCCTTAATTTAGATGCTTCCGATATCTCACTGGTATGCGTGAAGGTGGCATGTTTGGCTATGCTATGTTTGT
TTAGTAACTGTATATCTATCTTCCCTTCATATGTGCTATTAGCATAATCATCTTCGATGTATGCGCCTCCTGAACTGACTCACCTCAATATATTATATGT
ATATTATGATCTACATATACGCTTAGACCATTCTTATAATACTTTACGATATCCTAGTATTATGCGACAATTACAAGCTATCAATGAATATCTATAGTCT
TGAGTCCTTTTCTCCATTAACATAGTTTGAGCAGTGATCCAGCGCTAACTATCTGATTCGTGTTCTCGNCTTGCGATCTCCATCCTNCTCTCTACTCGAC
AATCTCTAGTTGTCTTACATAGCTCTTGTGAACATATAGTATCTCCTGCTGCGTATCACCACCTCTCATATCTCCGTGCTCTTGTTTGGCTCCCTTATAT
CACTATAATTGTATATCTCTTGCACCCAACTTCTTCATGATCTCAATGTTTCCACCTTATGATCTCTACGCACACTATTTTGTTTATGTCATGAAAGCTA
TAGTATANCTTGCACATACATCCCGCCCCGTCTATTATATCTGCTGAGTTCATCCATTTCTTTGCTTGTGTCTATGTATTATCTGATGTTCTCTTCGCTT
ATATCTCGTTTAGTCTACTTTCGTGCCCTTNAGCTTTCGCATACCGGCCATCTTCCATCTCCTGATAAATGTACTCTGTAGCTGCCTCGCAAACGCTATT
CTTTGCTTGACTATCTGCTATGAGATGCCCACTCCCAGCGTATGGGCTTGGCTCAGATGCTGCGACTACTCCTGTGTCGTCATTCGGTCTGCGCGCATGA
TGTCATCNACACTTGACTGTGCAACTCGTTTTCATACCACCCTCGACCTTTGACCCTCAAGGCGGCCCTCAGACTGCGATTAGAGCGTGTCCTTACTGAC
ATCCGAGTTTGTGCTATCTCGTTTCCATCTCCTCTTATACATATCCATCATGACATAATGCGGACTATACTCGAGCATTTCAGCGCTAATTCAATCCTCT
CTTCAGCTTCTATATCTCTACGCTCAGCCATATATTCAACTTTTACTATT
>LE_HBa0109C03_SP6_96484 (trimmed for quality and cloning vector)
CAATT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.598643
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0109C03
Clone
Clone name
hba-109c3
LE_HBa0109C03
C06HBa0109C03
P109C03
Clone type
BAC
Contamination
none
Estimated length
133,519
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found