Clone Read LE_HBa0109D12_SP6_96550

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0109D12_SP6_96550
Primer
SP6
ID from Seq. Facility
LE_HBa_109_D12-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 2050 raw
Sequence
>LE_HBa0109D12_SP6_96550 (raw untrimmed)
TCGTATAGGGATAGTGAGCGATGGAGGCGGAGCAGGACAGCGCTGAGAGACGGGGGTAGNATATGGCGGAAGGGTGATGGAGTATAATNAGTGAGAGCNA
GAGAAGTGGCAGAGAGGCGTTAGTGTGGCTATAGTGTATGTCGAATTANCGATNTGAGTATNATTTGTCTCCCCCATTTATATTAGAGAGCGTGCCNCGC
CCGGNCNCTNCTTNACAACGANGAGNGNGCGGCGAAGGCAGAGCGCATGAGAGAGAGGGCGCCCCCGCTGATAANCGNAGAGAGGGGGACAGCACCNCGC
ATNAGCGNCATACGAAGAAATGGAGACGATGGGCGGACAGGANTGAACAAATAGGNGNGATGATGCGAGAATACGGAAGGATGAGAGTGAGGAGAGGGCG
CGCANGANGCAATAGAGCGTGTGGATGACTGTGTCCTCCACGAAGAGCGTGGANCGTNGAGTGGTGGGGTATTTGAATATATACTGATACATTTATGTAC
GTNTGTGTGATCTCGCTGTGCTCGCACGCACACATACTGACAAACGAGTNATAATGTGACAAAGAGAGATTATAGTGTAGATAAANAGCGACACGACAGC
NTTGGNGTNTGCACGNGAAGACGAGAGGGTGTACGATACGCTNATAGAAATAGAATGATTGAGATGCACACATTATGATGTCAATAGGGNGTGGGCTGAG
ANAGATNGCATGCATATTGTCGTGTTACGTGATAANCATTACATATANATGTATTATATTGATGTGAATGTTAGGGTGNATGAATAGTGCGAGTAATGTG
CTAGGAGGATAGTAGANGATGANGATGATGAAGCGTGGTNTGAGTCAGATAGTTAGAGCANGANGNGANGAAGGCGGANCGATNGANTCACACACTCAGA
CAAGATNATATGAACATANGCTATAACTGACGATGCCTCGACGATGTATACATTGAGANTAGATGCGTGANTTGTGATANATGTGAGANGTACATNGGAT
GAAGTAGGATGATGTGATGATAGTGTNAGTNGAGTGCGATNATGCGACAATACGANGNANGTGTACAGGATGNCGACGCATATNANGCATATGCATGAGN
CTAGAATGNCGCGCATGCACAGGGGAGTGANGAAGACANATNAGANANCCNGTGCTACTGGACTAGATGGATCATAGNTGCGGTAGATGATGANACAACT
CGAGATGGGNTGCAAGGGNCGNAGAAAGCATGCGTACAAATNCNANATTGANTGCATCGTACTACTCAACTGTACAGGATGTCTGTATATGTAGTNCATA
CTGACTTNTNAGCAGGGTACGTGCGACGTTGATACATATATCAGTGGATAGTACAGACGTTGATGAGAGANTNAGGGGNANCACGCGCGCGNGNATGACA
TGGCTGAACNGTAAGACGGNGAACTATNACNGNAGATGTAGATAGAACGGAGGGGAATGCGCGGCAGTGAGACGTNTNCGTGNAGAGGATAGCGACTGAA
CAGAAGGGTCAGGATAGNGCGANANGANGTGNGNNGNCGAGANCATATNAGAGACAGCTAGANGACTGTGATGANCATNGCGCGAGACAGTACAGACAGA
CAGACNGAANGTATGTGAGNATCGNCTCGCTGTCAACNGCAACATATGAGATATGACTANATANGANANAGACACTATNACAAGTGCNATNGANCAGTNG
TNNANACANCAGCACNGATGTGANTGNGATGCGCTGCGACATCGTNTGGCTGCGAGACATNTGTNATANTGATNACGCGATNTNGAAGTGNCATGGTACA
TACGTGTNTGATGATGGCGNATTGAGCATAGCTCGGAGGGNANGNGTAGTAGGNNGACTATGANTGGGACGGGGAGCTTATAAATAGTAGNAGCTGTGAC
ATTCGTCATAGTAGCTGATGACTNGTAGTGAGTNTGCCAGTACTTTNCTGTCATNGANTNGCTNCATNTAAGACGTTANAANGATATNGTATCGTAATNA
NTGTCANACTCTGGCTGNTGTGGTNGCTGTATNCATCATCGCTCATATAN
>LE_HBa0109D12_SP6_96550 (trimmed for quality and cloning vector)
T

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0109D12
Clone
Clone name
hba-109d12
LE_HBa0109D12
P109D12
Clone type
BAC
Contamination
none
Estimated length
120,875
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found