Clone Read LE_HBa0109E21_SP6_96616

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0109E21_SP6_96616
Primer
SP6
ID from Seq. Facility
LE_HBa_109_E21-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
8 trimmed for vector and quality, 1653 raw
Sequence
>LE_HBa0109E21_SP6_96616 (raw untrimmed)
CTTGCTTTCTTTCCTTCTCCTCTCTCCTCATCATGGTTCTGTTTCTCAGCTGCTGTCGGGTTCAGACATGTGTCATAATGTGTACGTAAGCTGCCTTATA
ACTACGTTGCCTATCGGATACAATGATACTGTATCTATTCGTGCATCTCTCACGCCTCTCTCTAGTCTGTGAAGCATAANTCAGAGTATAATATCAGTCA
CAGCTANTGATCTGTGNAAAGAAGTAAGACATATCCACCTCACTGATATACGNTGATCTCGCTTATACTANGNANGNANCNCTTCGNCGTNGNANATGAC
A
CAGACGCTGACCCTAGGTCAGTACAGAGTCGTTGTAGACTNTGATCCCGNGNCNCAATATACCACAGGGCGATAGAAGTCTTATTAGTGAGTGAGGACG
TAGNGATACNTGATCAGATATAAGACAGATCTAAGTAANCAGAAGANAGANGGTGTGGAAGATANACATGTGTAAAGGAGGTAGTAGAGTACAGAAGACG
TGGATCGACTGGGTGTAGCTCGTAGGACGTGCTCGATCGACACTATACAACTAGAATGTGACATTCTTTTAATAGGTCACACCGCTCGGGGGCCGATTGA
AAGAGTCGCAGCACACTGATCGACTCTTAGAGCGAACACACGACAGTACACAGAATTGTAGCGAGAGGACATGTACTACAGATNCACGCAGCTATCTACT
TTGNATTGCGCATGTACGTGTACTATACTTTGTACACATCGACGCTCTGGTTCTAGGGTGCTGGTGCACATANACTAACANGTGCGTGCACATAGCTCGT
ACATCTGGTGCTGGCCAGAATATCAGAGTCTTGCTGCGACCATTCGGAGGCAATGTGCTCGCACAAGTGCTTCTCATACACATTATAGTATTGTCAAAGC
GCGAGCGTCGTGCGGCAGGTAGATGAAGTATCTAGTCAGATTACTATTTTGTCTTTTGCTTTATGGCCACGGGGCCCACTACTNGCGCTTGTCTAGACGT
GTTCACGGTGGNGCTACCTAGCTTGACTATCGCAATAAGGAGGTCTGAGTGGCATGNACGCTGATTCTTCTCACTTGGATATGTAGTCAGTACCTACAGT
ACGGTGTCGAGTGCTCAGACGGGCGCTACGCTACCACCACGACTCCTTACGGCACTACTCCGGTCTGGTGATGCCGCACACCCCGCCGGGAGCTCTGCGC
TGCGCGCCTTGGTCTNAGTTCATACTTNACACGTCACTCANCAGCTATAGTGTCTCGTACTTGCTTGCTGTACTAGTCGCATGATCTAGATGTATGAGAG
ATTTATGGTCATGTGTTATGCTGGTGCGATAGGTCCGGAGCGCTCACTTACTGTCCCGCTCTGCGCTGCGCTCTGTCAACTGGCAGTGCGCTGTGGCTTC
GGTCCACGCTTCCACGTGCGACTGTGTCTGGATCGTTGCTGCGCGGCGTGTCGCGTCTCGTGCTGCGGCAACCTCTGGTANGCTACTCGTGTGCTTACGG
GCTGCGCGTGCGGTCGCTCGTCATGTCATTGCCTACTACACTGATCTGCTTAAACTCGCTGCAACGCACGGCGTCTATTTGACTCGCCTCGGACCCGACA
GCGATCAGTATCCGCAAAGCGTGCACTTGACTACGAATGCTAATTGAACAAGT
>LE_HBa0109E21_SP6_96616 (trimmed for quality and cloning vector)
CAGACGCT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.229648
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0109E21
Clone
Clone name
hba-109e21
LE_HBa0109E21
C03HBa0109E21
P109E21
Clone type
BAC
Contamination
none
Estimated length
72,059
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found