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Clone Read LE_HBa0141A12_SP6_99478

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0141A12_SP6_99478
Primer
SP6
ID from Seq. Facility
LE_HBa_141_A12-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
19 trimmed for vector and quality, 894 raw
Sequence
>LE_HBa0141A12_SP6_99478 (raw untrimmed)
GGGCATACTTGNAGCGCGAGCTGCTCATCATTCCACTCGCACGTTTGTTCGCACTTCCTTCGGATCATTACCCCATGGACAACCTCCATATGTCCTGGGG
CGAAGATGCGTATCATGACTGTATTAATTTTTCTACTTTGTTCCTGTTATTATGACCAAGTCAAACGCCCTGCAGTAATCTTGACGTCTGATGACCTCTT
TAAAAGATCTGATTGGCATGACTGGGCTGATCTGATAATTA
ATGATGATGATGTTTTGGATTCAAGCTGGACCAATATTCTTGTTGATATCCATCCTCCT
TACACTAAGGTTCGATTCCGCTGCCTTACTGCTCATGTTTCCTTTCTGGGAGCGGGGGGCATCATATTGTTTGTTCCACAACCATTTGTTTGGGCAAGCA
AGCACCACTTTTGCCATTGTACACTTTAATTTTCATGCTACAATTTTCTCTTATTTGTCCATGTACGTGAAACATAATTCACTCTTGTTGTACCCTTCTA
ACTCATCTTTCCGTTGGAACCACTCCCGAGTCCTGATTCCTGGGCACTAGGTTCCTTGCTTTCTGCTTTATATGACGATGATCATCTTTTTTCTCATCTA
TTTCTGATATCGATCTGAATTCCGAGCCGGGCAATACTATACTCATCATCATCCTCTTCCTGCTGCTGCTGCCTCGTCCGGGCAATACTACCCAATATGT
CACTCATCTTCGACACTCACGGTGATTAATCCGCTGATGCAATGGACTCACGAGCTCTCCGTTATCTTTAAGAAACACATCAGCACCTTGGCGGGAGCTA
AGAGTCTGACCTCTAGCTTCATATACCAATGTGTCTTTATTATTGACGATAAAAAGAGTAAAGCTTATTTTGTGTTATGAATCAAACTTTAGCT
>LE_HBa0141A12_SP6_99478 (trimmed for quality and cloning vector)
ATGATGATGATGTTTTGGA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.580264
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0141A12
Clone
Clone name
hba-141a12
LE_HBa0141A12
C05HBa0141A12
P141A12
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found