SGN Marker TG370
SGN-M104
Synonyms |
Locus associations |
RFLP details |
Insert size
1500
|
Vector
pGEM4Z
|
Cutting Site
PST1
|
Drug Resistance
AMP
|
Image |
Forward sequence
AGCAAATGCAGAAGAAAATCGAAGCTCTGTTTCTGCTCACCACATGTATGATAAAATGCCAAGCTCAAATTCCACTAACAAAAGTGTTCC
TGCTGCTGAAAGGAGTGACAGTATAGTTTTGGGTTTGCAGAATGCAGCAAATTTTTCTGGGGTTCGGAAGAGGAAACGAGGTGAGTATGT TGCTGAAAAATGGGACCCGATTACGAAAAAACGGGTTTGTTTGGGTACATTCAACACTGCTGAAGAAGCTTCCGAGGCTTATTTAGCTAA GCAATGCGAATTTTCTACTGCCCGCCACATGCTTGATGAAATGCCAAGCTCAAATTCGACTAACAAAACTGCTAATGCTGCTGCCGGTTC CACTGATGCTGATCATGGGAAAAAGCCCCTTATTCAGGAGATATCTTTCAGTCACAAAAGCATGTTACTTGGAGCTGAATGGCATAACAT GGGG |
Reverse sequence
TACTAAAATCAACAGGCATATTGCTTTGCAACTTGGTCTCTTTTGATCTCTGAACGTCGAATTTCATATACTGATTAGCATGGAAAGTAA
CTTCAGCGGCTGATTCTGACTGAAATGCTTCACAATTTACAACTAATTTCTCTTTCCCAGCTTGCTTCTCCCCTGTACTAAAATCAACCG GCATATTGCTTTGCAACTCGGCCTCTTTTGATCTCTGAACGCCGACTTTCATATACAGATTAGCATGGAAAGTTTCTCCAGCAACTGATT CAGGCTGAAATCCTTCACAATTTACAGCTATTTTCTCTTTCCCAACTTGCTTCTCCCTTGCATTTAAATGAATTTTCTTACTACATTTCT TCTTTGCCTTGACTATTTCCCGAAACTCTAGCTTCTTAGATTGATAAGCTAGGGAAGCCTCTTCATACGTGCCAAAAGTCCCCAACCAAA TCTTTTTCTTACTAAT |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U145008 | 2e-06 | 38 (8.4% of RFLP seq) | + |
SGN-U145009 | 2e-06 | 38 (8.4% of RFLP seq) | + |
SGN-U159368 | 7e-68 | 129 (28.4% of RFLP seq) | + |
SGN-U159368 | 4.8e-72 | 136 (29.2% of RFLP seq) | - |
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| ![]() Eggplant-RAD 2012 |
| ![]() Potato meta-QTL consensus map |
| ![]() Eggplant-COSII |
| ![]() Tomato-EXPEN 2000 |
| ![]() Eggplant-LXM 2002 |
| ![]() Tomato-EXPEN 1992 |
Overgo hybridization and physical mapping |
TG370 was used as an overgo probe on plate 7 [well E4]
Plausible BAC Matches: P055I14, P025K02, P329H05
Overgo Sequences
A sequence
AGAGGAAACGAGGTGAGTATGTTG
|
B sequence
GGGTCCCATTTTTCAGCAACATAC
|
AB sequence
AGAGGAAACGAGGTGAGTATGTTGCTGAAA
|
Marker sequence
AGCAAATGCAGAAGAAAATCGAAGCTCTGTTTCTGCTCACCACATGTATG
ATAAAATGCCAAGCTCAAATTCCACTAACAAAAGTGTTCCTGCTGCTGAA AGGAGTGACAGTATAGTTTTGGGTTTGCAGAATGCAGCAAATTTTTCTGG GGTTCGGAAGAGGAAACGAGGTGAGTATGTTGCTGAAAAATGGGACCCGA TTACGAAAAAACGGGTTTGTTTGGGTACATTCAACACTGCTGAAGAAGCT TCCGAGGCTTATTTAGCTAAGCAATGCGAATTTTCTACTGCCCGCCACAT GCTTGATGAAATGCCAAGCTCAAATTCGACTAACAAAACTGCTAATGCTG CTGCCGGTTCCACTGATGCTGATCATGGGAAAAAGCCCCTTATTCAGGAG ATATCTTTCAGTCACAAAAGCATGTTACTTGGAGCTGAATGGCATAACAT GGGG |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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