SGN Marker T0123
SGN-M1361
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
| Synonyms |
| Locus associations |
| COS information |
MIPS Category: 1.01.10
Tomato EST read: TPRAA15TV
Arabidopsis best BAC match: U93215.2
Arabidopsis position: 2.1730000
Arabidopsis identities: 0.688
Best GenBank protein hit: AAC35857.1
Evalue: 6.2e-53
Identities: 0.955
Description: cinnamic acid 4-hydroxylase [Capsicum chinense]
Comment: phenylpropanoid metabolism: second step of Phe utilization
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPRAA15TV
Arabidopsis best BAC match: U93215.2
Arabidopsis position: 2.1730000
Arabidopsis identities: 0.688
Best GenBank protein hit: AAC35857.1
Evalue: 6.2e-53
Identities: 0.955
Description: cinnamic acid 4-hydroxylase [Capsicum chinense]
Comment: phenylpropanoid metabolism: second step of Phe utilization
More information about COS markers can be found on the COS markers page.
 Mapped locations
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Mapped locations
|  Tomato-EXPEN 2000 |
| Overgo hybridization and physical mapping |
T0123 was used as an overgo probe on plate 11 [well F5]
Plausible BAC Matches: P151D08, P031A19, P046G05, P253F09, P169E06, P253F10, P268B13, P192F02, P035A20, P320G21, P079K16, P072G12, P261A12
Overgo Sequences
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A sequence
GGAGGCAACATCTCAAAGTTCTGC
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B sequence
CCATTGGACGTTTGGTGCAGAACT
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AB sequence
GGAGGCAACATCTCAAAGTTCTGCACCAAA
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Marker sequence
CGTCAAAATAATGCAATTGTCAGAAAGCCAAATTACCATTGTACATCATA
TAGGTAAAACTTATAATGAATCTAGTCTAATAAGACTTTTATGAAAAACA TAAAAGAGAAGAAAATTTTCTGAACAAACAAACAACAGTCATAATTAACT GATAGTATTACAAAGTTTAGAAAGATCTTGGTTTCATCACAATGGTGGAA TGCTTCAAAATGTGGAGACTGAACTGTCCACCTTTCTCCGAGGTGTCGAG CTTCGACTGCCCTGGAGGAGGCAACATCTCAAAGTTCTGCACCAAACGTC CAATGGTGATGCCAAGAATTGGCAATGCAAGGATAATTCCGGGGCAACTC CTGCTGCCAACACCGAAAGGAAGAAATCTGAAGTCGTTGCCATTGGCTTC AACGTGTTTCTCCTCTTCCAAGAACCTCTCAGGTCTGAACTCTTCAGGTT TCTTCCAGTGGGCGGGGTTGTTAGCTAGCCACCAAGCGTTAACTAAGATT TTGCTCTCAGCTGGAATATCGTATGCAGCAAGCTTTGCATCATGAAGGTT CATGTGTGGGACTAAAAGAGGAATT |
| Related Markers
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of T0123
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| User comments |
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