SGN Marker T0246
SGN-M1388
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 5.01
Tomato EST read: TOVAM10TH
Arabidopsis best BAC match: AC002388.2
Arabidopsis position: 2.2410000
Arabidopsis identities: 0.888
Best GenBank protein hit: AAC31838.1
Evalue: 1.4e-44
Identities: 0.659
Description: 60S ribosomal protein L30 [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TOVAM10TH
Arabidopsis best BAC match: AC002388.2
Arabidopsis position: 2.2410000
Arabidopsis identities: 0.888
Best GenBank protein hit: AAC31838.1
Evalue: 1.4e-44
Identities: 0.659
Description: 60S ribosomal protein L30 [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T0246 was used as an overgo probe on plate 6 [well B4]
Plausible BAC Matches: P302A22, P131K01, P151G22, P138P08
Overgo Sequences
A sequence
CATATAGACGGCTGCATGGAAAGG
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B sequence
GAGTCCTGAGTCATGTCCTTTCCA
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AB sequence
CATATAGACGGCTGCATGGAAAGGACATGA
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Marker sequence
GCACGAGGTTCTGTAGGTCTAAGTGCCACAAGAACTTTAAGATGAAGAGG
AATCCTCGTAAAGTTAAATGGACTAAAGCATATAGACGGCTGCATGGAAA GGACATGACTCAGGACTCAACATTTGAATTCGAGAGGAAGCGTAATAGGC CAGAGAGATATGACAGGAATGTAACTGAGAACACTTTGAAGGCCATCAAG AAAATTGATAAAATCAGAGTTGACAGGGAGGAGAGACATATTGCAAAGAG GATGAAAGGAAATAAAGCCAAGGAGCAGAGAGAAGCAACAAAGGAGCTCG AGCAGAGCATTCACATGGTCAAAGCTCCTTCTGTGCTCTTCAAAGAGCCA TCACTTACACTACCTACCAAGGTCAAGGTTTTGCAAAAGCAGTCAGAGGA AAATCGCATGGAGGAATGAACATTTCGCTTCCCATATTCTATTTTTTCAA ACTAAAAAAACACTAAATCGGTCCATACTTATTTTTGCAGTATGTATAAC ATTTTGATGACATTGACATGCTAAGCTNTCCCTTACCTTCAGAATAGTAA TGGTTTTTCGACTTAGTCTTTGGCGTAGAA |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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