SGN Marker T0308
SGN-M1402
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 2.1
Tomato EST read: TPRAB01TH
Arabidopsis best BAC match: AL031135.1
Arabidopsis position: 4.1820000
Arabidopsis identities: 0.888
Best GenBank protein hit: CAA74776.1
Evalue: 9.4e-98
Identities: 0.965
Description: NAD-dependent isocitrate dehydrogenase [Nicotiana tabacum]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPRAB01TH
Arabidopsis best BAC match: AL031135.1
Arabidopsis position: 4.1820000
Arabidopsis identities: 0.888
Best GenBank protein hit: CAA74776.1
Evalue: 9.4e-98
Identities: 0.965
Description: NAD-dependent isocitrate dehydrogenase [Nicotiana tabacum]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T0308 was used as an overgo probe on plate 6 [well E6]
Plausible BAC Matches: P157G16, P211P08, P286I11, P046K11, P246M13, P178A23, P140P20
Overgo Sequences
A sequence
ATTCCGGATTGGAGCATGAGGTTG
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B sequence
TCTACAACACCGGGAACAACCTCA
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AB sequence
ATTCCGGATTGGAGCATGAGGTTGTTCCCG
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Marker sequence
AGGCCTTCCTACGCGTCATGAGAATGTTGATATTGTTGTTATTAGGGAGA
ATACTGAGGGCGAATATTCCGGATTGGAGCATGAGGTTGTTCCCGGTGTT GTAGAGAGTCTCAAGGTGATGACAAAGTTTTGCTCAGAAAGAATTGCTAA ATATGCCTTTGAATATGCATACCTCAACAATCGGAAGGTAGTGACTGCTG TGCACAAGGCAAACATTATGAAACTTGCTGATGGTTTATTTTTGGAGTCT TGTCGAGAGATCGCAAGCAAATACCCTGGGATCAAGTACAATGAGATAAT TGTGGACAACTGTTGCATGCAACTTGTATCAAAGCCTGAGCAATTTGATG TTATGGTCACCCCTAATCTCTACGGAAATCTGGTAGCAAATACAGCAGCT GGTATTGCTGGAGGCACAGGTGTTATGCCAGGAGGCAATGTGGGGGCTGA CCATGCCGTGTTTGAGCAAGGTGCTTCAGCAGGAAATGTAGGAAATGAAA AGATACTAGAGCAAAAGAAGGCAAACCCAATTGCCTTGTTTCTTTCATCA GCCATGATGTTGAGACATCTGCAGTTCCCTTCATTTGCAGATAGACTAGA GACTTCAGTGAAGCGT |
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User comments |
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