SGN Marker T0405
SGN-M1425
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
| Synonyms |
| Locus associations |
| COS information |
MIPS Category: 3.25
Tomato EST read: TOVCI09TH
Arabidopsis best BAC match: AC007290.5
Arabidopsis position: 2.1540000
Arabidopsis identities: 0.909
Best GenBank protein hit: AAD26882.2
Evalue: 5.0e-39
Identities: 0.919
Description: "putative chromosome associated protein [Arabidopsis thaliana]/ e-25, SMCD [Mus musculus]"
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TOVCI09TH
Arabidopsis best BAC match: AC007290.5
Arabidopsis position: 2.1540000
Arabidopsis identities: 0.909
Best GenBank protein hit: AAD26882.2
Evalue: 5.0e-39
Identities: 0.919
Description: "putative chromosome associated protein [Arabidopsis thaliana]/ e-25, SMCD [Mus musculus]"
Comment:
More information about COS markers can be found on the COS markers page.
 Mapped locations
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Mapped locations
|  Tomato - Kazusa and SolCAP markers mapped to genome |
|  Kazusa F2-2000 genetic map |
|  Tomato-EXPEN 2000 |
| Overgo hybridization and physical mapping |
T0405 was used as an overgo probe on plate 4 [well E1]
Plausible BAC Matches: P055E14, P011E22, P244H10, P110G14
Overgo Sequences
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A sequence
AGTGAAGGTGTCGTTCACTGGACA
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B sequence
TGGCTGTGTTTCTCCTTGTCCAGT
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AB sequence
AGTGAAGGTGTCGTTCACTGGACAAGGAGA
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Marker sequence
AGGATGGTGAGGAAGATGACAATGATCCTGATGATGATGAGCCGCGTGCT
GATGCAGAGGGAAGAGTTGAGAAATATATTGGTGTGAAAGTGAAGGTGTC GTTCACTGGACAAGGAGAAACACAGCCAATGAAACAGTTATCAGGGGGCC AGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGAT CCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCA GTACAGAACAGCCGTGGGGAATATGGTTCGTGATTTGGCAGACAGGGGTA GCACGCAATTTATCACGACGACATTT |
| Genomic location of T0405
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| User comments |
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