SGN Marker T0486
SGN-M1440
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
| Synonyms |
| Locus associations |
| COS information |
MIPS Category: 98
Tomato EST read: TCAAZ16TH
Arabidopsis best BAC match: AC007354.2
Arabidopsis position: 1.0320000
Arabidopsis identities: 0.753
Best GenBank protein hit: CAA39708.1
Evalue: 3.4e-63
Identities: 0.788
Description: auxin-induced protein [Nicotiana tabacum]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TCAAZ16TH
Arabidopsis best BAC match: AC007354.2
Arabidopsis position: 1.0320000
Arabidopsis identities: 0.753
Best GenBank protein hit: CAA39708.1
Evalue: 3.4e-63
Identities: 0.788
Description: auxin-induced protein [Nicotiana tabacum]
Comment:
More information about COS markers can be found on the COS markers page.
 Mapped locations
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Mapped locations
|  Tomato-EXPEN 2000 |
| Overgo hybridization and physical mapping |
T0486 was used as an overgo probe on plate 14 [well D10]
Plausible BAC Matches: P226D21, P310L18
Overgo Sequences
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A sequence
CAAGGACTTGGTTGTCTGGGTATG
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B sequence
GACCGTAGAAATCGGACATACCCA
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AB sequence
CAAGGACTTGGTTGTCTGGGTATGTCCGAT
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Marker sequence
CAATGACGAAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAG
GGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTT CTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATG CCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCT TACACTAATGAAATCCTCCTTGGCAAGGCTTTGAAGGGAGGAATGAGGGA ACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGA TAGAAGTACGTGGAGAGCCATAATATGTAAGGGCAGCATGCGAGGCTAGC TTAAAGCGACTTGATGTTGATTGCATAGACTTGTACTACCAGCACCGGAT TGATACACGCGTGCCCATTGAAGTAACGGTTGGAGAACTTAA |
| Related Markers
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of T0486
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| User comments |
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