SGN Marker T0487
SGN-M1441
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 11.05.03
Tomato EST read: TCABA19TH
Arabidopsis best BAC match: AL049500.1
Arabidopsis position: 4.0730000
Arabidopsis identities: 0.736
Best GenBank protein hit: AAC64171.1
Evalue: 2e-113
Identities: 1.000
Description: pathogenesis-related protein osmotin precursor (Lycopersicon esculentum)
Comment: osmotin: antifungal activity
More information about COS markers can be found on the COS markers page.
Tomato EST read: TCABA19TH
Arabidopsis best BAC match: AL049500.1
Arabidopsis position: 4.0730000
Arabidopsis identities: 0.736
Best GenBank protein hit: AAC64171.1
Evalue: 2e-113
Identities: 1.000
Description: pathogenesis-related protein osmotin precursor (Lycopersicon esculentum)
Comment: osmotin: antifungal activity
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T0487 was used as an overgo probe on plate 12 [well B12]
Plausible BAC Matches: P097D15, P172B13, P235H18
Overgo Sequences
A sequence
ACCTGGAGGATGTAACAACCCTTG
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B sequence
TCCTCCAAACGTGGTACAAGGGTT
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AB sequence
ACCTGGAGGATGTAACAACCCTTGTACCAC
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Marker sequence
CAAACATGGGCTACTTGACATCTTCTTTTGTTCTCTTCTTCCTTCTTTGT
GTGACTTATACTTATGCTGCCACTATTGAGGTACGCAACAACTGTCCATA CACCGTTTGGGCGGCATCGACTCCGATAGGCGGTGGTCGACGTCTCAATC GAGGCCAAACATGGGTCATCAATGCTCCGAGGGGAACTAAGATGGCACGT ATATGGGGTCGTACTGGTTGCAACTTTAATGCTGCAGGCAGAGGTACATG TCAGACTGGTGATTGTGGTGGAGTCTTACAGTGTACCGGATGGGGCAAAC CCCCAAACACCCTAGCCGAGTACGCCTTGGACCAGTTTAGCAACTTAGAT TTTTGGGACATTTCTTTAGTCGATGGATTTAATATTCCAATGACTTTTGC CCCAACAAAACCTAGTGGAGGAAAATGTCACGCAATTCATTGCACGGCCA ATATAAATGGTGAATGTCCTCGCGCCCTTAAGGTACCTGGAGGATGTAAC AACCCTTGTACCACGTTTGGAGGACAACAATATTGTTGCACCCAAGGTCC ATGTGG |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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