SGN Marker T0506
SGN-M1448
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 1.05
Tomato EST read: TCABD41TH
Arabidopsis best BAC match: AC004077.2
Arabidopsis position: 2.1910000
Arabidopsis identities: 0.944
Best GenBank protein hit: AAC26685.1
Evalue: 9.1e-66
Identities: 0.801
Description: putative pyruvate dehydrogenase E1 beta subunit (Arabidopsis thaliniana)/3rd pyruvate dehydrogenase E1 beta subunit A.thaliana
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TCABD41TH
Arabidopsis best BAC match: AC004077.2
Arabidopsis position: 2.1910000
Arabidopsis identities: 0.944
Best GenBank protein hit: AAC26685.1
Evalue: 9.1e-66
Identities: 0.801
Description: putative pyruvate dehydrogenase E1 beta subunit (Arabidopsis thaliniana)/3rd pyruvate dehydrogenase E1 beta subunit A.thaliana
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T0506 was used as an overgo probe on plate 6 [well G12]
Plausible BAC Matches: P228J04, P267O02, P184B22, P038M05, P156K11, P077H05, P250K16, P029G22, P251H14, P063H12, P243C06, P319C03, P158D06, P039C03, P036I24, P008E01, P266O02, P223D21, P190K14, P261I22, P030B23, P237I13, P168N14, P224I11, P157A17
Overgo Sequences
A sequence
GTCGGTCATTATGGAGGTTCGTAC
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B sequence
GGCCTTTAGTCACCTTGTACGAAC
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AB sequence
GTCGGTCATTATGGAGGTTCGTACAAGGTG
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Marker sequence
GTTGGTGCAGAGAGGAAAGGAAGGACTTTTGTGGTTAGATCTGATGGGGG
TTTGAGCTATGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATTA CTAATGCTGTTGCTACTAAAGAAGATACTGCTGCAGCTTCTACTTCATCA AAGCCAGGGCATGAACTATTGCTCTTTGAGGCCCTCCGTGAAGGTCTTGA AGAAGAAATGGACAGGGATCCCGCTGTTTGTGTAATGGGTGAAGATGTCG GTCATTATGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATAT GGTGATCTCAGGGTTCTTGACACTCCCATTGCTGAGAACTCTTTCACTGG TATGGGCATTGGAGCTGCAATGACCGGTTTGCGTCCAGTTATTGAGGGAA TGAACATGGGATTTCTTCTTCTAGCCTTTAATCAAATATCTAACAACTGC GGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTCGTCAT CCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGA |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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