SGN Marker T0607
SGN-M1494
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TMEAA76TH
Arabidopsis best BAC match: AB025632.1
Arabidopsis position: 5.2480000
Arabidopsis identities: 0.594
Best GenBank protein hit: BAB10260.1
Evalue: 2.3e-24
Identities: 0.469
Description: contains similarity to unknown protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TMEAA76TH
Arabidopsis best BAC match: AB025632.1
Arabidopsis position: 5.2480000
Arabidopsis identities: 0.594
Best GenBank protein hit: BAB10260.1
Evalue: 2.3e-24
Identities: 0.469
Description: contains similarity to unknown protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T0607 was used as an overgo probe on plate 6 [well G7]
Plausible BAC Matches: P088D09, P104F22, P169D12, P056I13, P126E02, P099N02, P006K24, P003D04
Overgo Sequences
A sequence
ATCAATGGGAGCACCAGAGTCATC
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B sequence
AAGATCACATCCGGGTGATGACTC
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AB sequence
ATCAATGGGAGCACCAGAGTCATCACCCGG
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Marker sequence
GAAATGTTGAAGCAAATGGTTCTGTGTTTGATCCTAAGCTATCATCGGAG
CTGAGATTGTTACTCGAGCGGTATGCCAATATCTTGGGATTATCCTTCCA GGATGCTGTAGGGATGGCTTTTGATATTTCGAGTGGTCTTAAGGATGCAG AGGCATGGAGCTGCAATCTGATTGATTGGATGAACTTTTTTGTATTTTTA AATGCTTGGAATCTTTATTCTCATGAAGTAGATAGAGATTCAAATAAGCA TGGTACTACATGGCTTGTGAATTTGATTCTGAAGAAGTGTATCCTGGATA AAGTGAGATCAATGGGAGCACCAGAGTCATCACCCGGATGTGATCTTCCT CATTTGGTGCTATTGGTAACTGAACCTTTAGCTTGGCATATTATGGTGAT TCAGTGTTGTGCCAGGTCATTATTGCCTTCAGGAAAGAG |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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