SGN Marker T0650
SGN-M1523
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 98
Tomato EST read: TMEAG54TH
Arabidopsis best BAC match: AC005275.1
Arabidopsis position: 4.0190000
Arabidopsis identities: 0.668
Best GenBank protein hit: AAD11582.1
Evalue: 7.6e-57
Identities: 0.668
Description: GH3-like protein [Arabidopsis thaliana]
Comment: "GH3 is cotton lipid transfer protein, compare with TFBAA15THB (same?)"
More information about COS markers can be found on the COS markers page.
Tomato EST read: TMEAG54TH
Arabidopsis best BAC match: AC005275.1
Arabidopsis position: 4.0190000
Arabidopsis identities: 0.668
Best GenBank protein hit: AAD11582.1
Evalue: 7.6e-57
Identities: 0.668
Description: GH3-like protein [Arabidopsis thaliana]
Comment: "GH3 is cotton lipid transfer protein, compare with TFBAA15THB (same?)"
More information about COS markers can be found on the COS markers page.
![]() |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T0650 was used as an overgo probe on plate 15 [well D10]
Plausible BAC Matches: None
Overgo Sequences
A sequence
GCAAGTCAAGAGCTGAGCTAGTAG
|
B sequence
GCATGGCTTGTGAAGTCTACTAGC
|
AB sequence
GCAAGTCAAGAGCTGAGCTAGTAGACTTCA
|
Marker sequence
CCAAACTCAACTTTATATGCAGGAGAAAGCTGATATTAACAGTAAACATC
GATAAGAATACTGAACAGGACCTTCAGTTAGTGGTGGAGAGAGGTTCGCG AATACTAATAAGCAAGTCAAGAGCTGAGCTAGTAGACTTCACAAGCCATG CAAATGTATCAAAAAGACCAGGCCATTATGTGATCTATTGGGAAATCAAA GGTGATGTTGATGAAAATGTTTTTGGAGAGTGTTGTAGGGAGATGGATGC ATCTTTTGTTGATCATGGATATGTTGTATCAAGAAAAACAAATTCAATTG GACCATTAGAACTTTGCATTGTGGAAAGAGGTACTTTCAAGAAGATTTTG GAACATTTTATTGGAAATGGAGCAGCATTAAGCCAATTCAAGACTCCAAG ATGCACTAGCAACCAAGTACTATTAAGAATCCTTAATGTATGTACCATTA AAAGGTTTTATAGCACAGCTTATGGTTGATACAATGTTTTTGTAACATAA GTGATCAATTTGCATTGATATTTACTTTATTT |
![]() |
User comments |
Please wait, checking for comments. (If comments do not show up, access them here)