SGN Marker T0656
SGN-M1527
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TMEAG68TH
Arabidopsis best BAC match: AB024035.1
Arabidopsis position: 5.2380000
Arabidopsis identities: 0.902
Best GenBank protein hit: BAA97034.1
Evalue: 8.6e-46
Identities: 0.902
Description: similar to unknown [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TMEAG68TH
Arabidopsis best BAC match: AB024035.1
Arabidopsis position: 5.2380000
Arabidopsis identities: 0.902
Best GenBank protein hit: BAA97034.1
Evalue: 8.6e-46
Identities: 0.902
Description: similar to unknown [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T0656 was used as an overgo probe on plate 8 [well D6]
Plausible BAC Matches: P245M14, P302K10, P287L01, P267O16, P303O08, P310O01, P201O12, P124P24, P026P16
Non-Plausible BAC matches
Overgo Sequences
A sequence
AATGGCTTCTCTGCTGAACCCACC
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B sequence
TTGAGGCAGAGTGAGAGGTGGGTT
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AB sequence
AATGGCTTCTCTGCTGAACCCACCTCTCAC
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Marker sequence
TTCAATGGCTTCTCTGCTGAACCCACCTCTCACTCTGCCTCAAAACAAGC
TGAACCCTGGGGGTGTCTTATCTGTATCTACTAGTGGAATACCAAACAAA ATTTTTCAACCATCTTCAACACGATGGAGCCACAGGCGGCGTTTGATGAC GAGAGCTAAACCATCGGTGGAAATGGATATGCTGGCAAAAGATTCTGTAG GCACCGACGCTGTTGATGATAAGGGTGATCTTTCTTTTTCATCTCAAGCA GCACAGTCAAAATTTTCATTTGCAGATTTTGGAGTTGTTTGCATGCACCA CGTTGGGATACTATGTGAAAACCTTGAGAGGTCCTTAGACTTTTACCAGA ACATTCTTGGGCTAGAAATAAATGAGGCAAGACCACATGACAAACTTCCC TATAGAGGTGCTTGGTTGTGGGTGGGTTCTGAGATGATACATCTAATGGA GCTTCCAAATCCAGATCCTTATACTGGTAGGCCTGAGCACGGNGGCAGAG ACCGTCATACTTGCATAGCAATTCGCGATGTGTCTAAGCTGAAAGCTATT |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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