SGN Marker T0710
SGN-M1556
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 10.01.01.11
Tomato EST read: TMEDA41TH
Arabidopsis best BAC match: AB016885.1
Arabidopsis position: 5.2500000
Arabidopsis identities: 0.550
Best GenBank protein hit: CAC09580.1
Evalue: 3.5e-45
Identities: 0.505
Description: protein kinase (PK) [Fagus sylvatica]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TMEDA41TH
Arabidopsis best BAC match: AB016885.1
Arabidopsis position: 5.2500000
Arabidopsis identities: 0.550
Best GenBank protein hit: CAC09580.1
Evalue: 3.5e-45
Identities: 0.505
Description: protein kinase (PK) [Fagus sylvatica]
Comment:
More information about COS markers can be found on the COS markers page.
![]() |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T0710 was used as an overgo probe on plate 10 [well F11]
Plausible BAC Matches: None
Overgo Sequences
A sequence
ATCATGGTGTTGGGAGGGTGAGTT
|
B sequence
TCTGCTGTTTCCACAGAACTCACC
|
AB sequence
ATCATGGTGTTGGGAGGGTGAGTTCTGTGG
|
Marker sequence
GAAATGGATGATGAAGCTAATTCTTGGATTAGGAGAACAAAGTTTTCTCA
TACAGTTTGTCATAGGTTGGATTCTGCAAGATTGACGTCTATTCCTATTA GTACTATTCAGTCAGGAAGAATTGCTGGAGCAAAAACTAGACCTGGATCA GGTTCTTTTAATTCAATACCTGAGCCAACTGTTGCGCCTCTTCAGCGCAA TCCAACTACAAACAAACATAGGACTGTATCACCTCATCCAGAAACATCAG TTCCAGATACCTTTAAGGAGGCTCGATCTAGTCAGAAGAGATTTTCAACT CCGCGTCCACAAAGGAAGGAACATGAGAAGAAGATTGTGAGTAAGTCGTT TTATAAAGATTCTAGGGAATCGAAATCACCTACGTTGAGATCTCCTGGTT CAAGATCTCCATCAAATACAAGTCCCCTACGGCATTTCACATCATTCAAA TTCCATGACAAAACAAAGAGCCGAAAGGATTCAGCATGGAGTAGGTACTT TGATCATGGTGTTGGGAGGGTGAGTTCTGTGGAAACAGCAGATGAATATA CAATTGATCTTTCTAAGC |
![]() |
Related Genotyped Markers: These markers have been genotyped and share a name with this marker
![]() |
User comments |
Please wait, checking for comments. (If comments do not show up, access them here)