SGN Marker T0718
SGN-M1560
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TMECZ67TH
Arabidopsis best BAC match: AC006585.7
Arabidopsis position: 2.1410000
Arabidopsis identities: 0.747
Best GenBank protein hit: AAD23019.1
Evalue: 3.3e-39
Identities: 0.750
Description: putative steroid-binding protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TMECZ67TH
Arabidopsis best BAC match: AC006585.7
Arabidopsis position: 2.1410000
Arabidopsis identities: 0.747
Best GenBank protein hit: AAD23019.1
Evalue: 3.3e-39
Identities: 0.750
Description: putative steroid-binding protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T0718 was used as an overgo probe on plate 12 [well F3]
Plausible BAC Matches: P282B23, P317D24, P298D02
Overgo Sequences
A sequence
AAGATGGAGCTAACCGCGGATGAG
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B sequence
CGTCATATGCCTTCAGCTCATCCG
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AB sequence
AAGATGGAGCTAACCGCGGATGAGCTGAAG
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Marker sequence
TGAAGATGGAGCTAACCGCGGATGAGCTGAAGGCATATGACGGATCAGAT
CCATCAAAGCCAATTTATGTTGCAATCAAAGGTCGAATCTTCGATGTAAG CGCCGGTAATTCGTTCTATGGTCCCGGCGGGCCTTACTGTATGTTCGCCG GAAAAGATGCAAGCAGAGCACTTGCAAAGATGAGCAAGAATGAAGAAGAT GTTTCTCCATCTCTTGATGGATTATCTGAGAAAGAAATGGCTGTTCTCAA TGATTGGGAGACCAAATTCGAAGCTAAGTATTCAATTGTTGGAAATGTCA TTTCTTAATTACTTTTCCATCTGGGAATTATGAAGAAATAAATAAATGGT TTCCTATTTGCTCATCGATCTGTGTTTATGCAAAGACAAGATTAATTATG AATAAATTTTACCCTTG |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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