SGN Marker T0805
SGN-M1614
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 2.11.03
Tomato EST read: TMEBA54TH
Arabidopsis best BAC match: AL021811.1
Arabidopsis position: 4.1640000
Arabidopsis identities: 0.682
Best GenBank protein hit: CAA50520.1
Evalue: 4.2e-28
Identities: 0.811
Description: CF(o)II ATP synthase subunit 9 [Spinacia oleracea]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TMEBA54TH
Arabidopsis best BAC match: AL021811.1
Arabidopsis position: 4.1640000
Arabidopsis identities: 0.682
Best GenBank protein hit: CAA50520.1
Evalue: 4.2e-28
Identities: 0.811
Description: CF(o)II ATP synthase subunit 9 [Spinacia oleracea]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T0805 was used as an overgo probe on plate 5 [well A7]
Plausible BAC Matches: P026J12, P260C02, P044J22, P324A02, P330C17
Overgo Sequences
A sequence
GCTGAAGTGAAGCAACTGGAAGAC
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B sequence
TAATTGCAGCAGCCTGGTCTTCCA
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AB sequence
GCTGAAGTGAAGCAACTGGAAGACCAGGCT
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Marker sequence
GCCATGGCCAACATGATGATGAGCTCCTCCAAAGTTTTAATCACTTCTTC
ATCCTCCACCATCCCTCCATCACCAAGATTCAAACTTTCCCTCACCCAAA TCCCTTTTCCAAAACTACCCCTCCCCAAATCACCCAAATCCCTTGAAACC CTTTCAATCCCATCAACTCTCAAGTCCATTTCTGTCATTCTTGCAAGCTC ATTGGCCATGGCACCACCTTCGCTAGCAGAGGAAATTGAAAAAGCTTCCC TTTGTGACTTCAACTTGACACTCCCAATCATGATGGCTGAATTCCTCTTT CTCATGTTAGCTTTAGACAAGATTTACTTCAGCCCATTAGGGAAATTCAT GGATGAAAGAGATTCTGCCATTAAGGAGAAATTGAGCAGTGTGAAGGACA CCTCTGCTGAAGTGAAGCAACTGGAAGACCAGGCTGCTGCAATTATGAAG GCTGCAAGGGCTGAGATATCAGCAGCATTGAACAAGATGAAGAAAGAGAC TCAGCAAGAAGTAGAGCAGAAGATTGCAGAAGGAAGGAAGAAAGTTGAGG CTGAATTGCAAGAAGCTTTGGCTAGCTTAGAGAGTCAAAA |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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