SGN Marker T0877
SGN-M1648
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TMEAM49TH
Arabidopsis best BAC match: AC022314.5
Arabidopsis position: 1.0854000
Arabidopsis identities: 0.714
Best GenBank protein hit: AAF79680.1
Evalue: 1.2e-34
Identities: 0.641
Description: unknown protein; [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TMEAM49TH
Arabidopsis best BAC match: AC022314.5
Arabidopsis position: 1.0854000
Arabidopsis identities: 0.714
Best GenBank protein hit: AAF79680.1
Evalue: 1.2e-34
Identities: 0.641
Description: unknown protein; [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Eggplant-COSII |
| ![]() Tomato-EXPEN 2000 |
| ![]() Eggplant-LXM 2002 |
Overgo hybridization and physical mapping |
T0877 was used as an overgo probe on plate 6 [well G11]
Plausible BAC Matches: None
Overgo Sequences
A sequence
TATTCCAGGCTGTCAGGCTCTTGG
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B sequence
AATCTTGCTGGAGGGCCCAAGAGC
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AB sequence
TATTCCAGGCTGTCAGGCTCTTGGGCCCTC
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Marker sequence
GTTGAAATGGATAGAAAATAGAGAGAAGAAGAGAGGATGAATTTGTCATG
AGTCCATGGCCACTCGCTTTGCTCCTTCTTCTTACATTCATAGTTGTCAA CTTAAGCATTCAACTACACCTGCTGTTCTTCTTAATTCTTTTAGTGGAAG AAAACCCCCTTACAACACACTTGTATTCCAGGCTGTCAGGCTCTTGGGCC CTCCAGCAAGATTCGAAGCTTCAAAGCTGGAAGTCTTGTTAAAAGGAGAA GAAGTTGATACATACTCAAGTATCGTGCCAAGGACGTACACATTATCCCA TTGTGATTTTACTGCTAATCTGACATTAACAATCTCAAATAATATCCAAT ACGATCAGTTGAAAGGGTGGTATAATAAAGATGACGTGGTTGCTGAATGG ACAGAAGTGAAAGGTAATTTGTTTCTTGATGTCCACTGTTATGTGAGTGG ACCGAATCCCCTACAAGAGCTAGCTGCCGAGTTCAGATACCATATATTCT CCAA |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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