SGN Marker T0882
SGN-M1652
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 1.07.01
Tomato EST read: TMEAM70TH
Arabidopsis best BAC match: AC004005.2
Arabidopsis position: 2.2380000
Arabidopsis identities: 0.750
Best GenBank protein hit: AAD44809.1
Evalue: 1.3e-54
Identities: 0.798
Description: "6,7-dimethyl-8-ribityllumazine synthase precursor"
Comment: involved in riboflavin biosynthesis
More information about COS markers can be found on the COS markers page.
Tomato EST read: TMEAM70TH
Arabidopsis best BAC match: AC004005.2
Arabidopsis position: 2.2380000
Arabidopsis identities: 0.750
Best GenBank protein hit: AAD44809.1
Evalue: 1.3e-54
Identities: 0.798
Description: "6,7-dimethyl-8-ribityllumazine synthase precursor"
Comment: involved in riboflavin biosynthesis
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T0882 was used as an overgo probe on plate 4 [well D1]
Plausible BAC Matches: P183B02, P093P12, P170B09
Overgo Sequences
A sequence
TGAATCCTCAGCAGTCTCATCGTC
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B sequence
GACAAACTGCAGAGCTGACGATGA
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AB sequence
TGAATCCTCAGCAGTCTCATCGTCAGCTCT
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Marker sequence
TGGCGGCTTCAGCTTTCGGACAGTGTAGTCTTCTTCCTCGTACAGTATCT
TTGAATCCTCAGCAGTCTCATCGTCAGCTCTGCAGTTTGTCTTTCCATAG ACAAACTGTAAATTCTTCACTTCCTGCACTGTCATTCACTCAGTCTATAG GTTTTGGGTCTGCAATTGAGAGACATTGTGTGGATCGAAACGGGTCGGAT TTGTTTAAAACGGATGCTGTTCGTCAGTTGAATGGTTCAGTTATCTCTGC TAAGGGGCATCGGTTTGCTATTGTGGTTGCACGTTTTAATGATCTGATCA CCAAGAAGCTTTTGGAGGGAGCTTTGGAGACTTTCAAGAATTACTCGGTT AGAGAGGAAGATATTGATGTTGTGTGGGTTCCTGGTTGNTTTGAAATCGG CGTGACTGCACAGCTTCTTGGNAAGTCACAGAAATATCAC |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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