SGN Marker T0891
SGN-M1656
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TMEAO95TH
Arabidopsis best BAC match: AB016886.1
Arabidopsis position: 5.1710000
Arabidopsis identities: 0.758
Best GenBank protein hit: BAB11325.1
Evalue: 8.8e-74
Identities: 0.794
Description: similarity to unknown protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TMEAO95TH
Arabidopsis best BAC match: AB016886.1
Arabidopsis position: 5.1710000
Arabidopsis identities: 0.758
Best GenBank protein hit: BAB11325.1
Evalue: 8.8e-74
Identities: 0.794
Description: similarity to unknown protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T0891 was used as an overgo probe on plate 7 [well F10]
Plausible BAC Matches: P290O22
Non-Plausible BAC matches
Overgo Sequences
A sequence
AGTGGAGGCGACAAAACATCACAG
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B sequence
CATGAGTGGTACACCTCTGTGATG
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AB sequence
AGTGGAGGCGACAAAACATCACAGAGGTGT
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Marker sequence
GGAGAAAGCTTTCATCGGTTTGACCGCTACCTCAACTTCTCAAATCCTCT
GATCTCTGAAAATTTTGATCCTCGTGCTTGTGGTTGGGCATTTGGAATGA ACATCATTGATCTAAATGAGTGGAGGCGACAAAACATCACAGAGGTGTAC CACTCATGGCAAAATCGGAATCATGAAAGACAACTTTGGAAGTTGGGGAC CCTACCACCTGGTTTGATAACCTTTTGGAAGCGCACATATGCCCTTGACC GATCATGGCATGTCCTTGGACTTGGCTACAATCCAAATGTTAGCCAGAAG GACATCCAACGAGCAGCAGTCATACACTACAATGGAAACTTGAAACCATG GCTTGAAATAAGCATACCCAAGTTCCGGGACTACTGGTCAAAATTTGTTG ACTATGATCAGACATTTTTGCGAGAGTGTAATATCAACAAATTGGGTGGT TCATGAAGTGTTCTCTGCACATATTTCTCCTAATTCCTGAAATACAGCGA GCAAGCATTTGTTTAGTTTACAGGTCC |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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