SGN Marker T0954
SGN-M1679
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 98
Tomato EST read: TMEAV13TH
Arabidopsis best BAC match: AC005662.2
Arabidopsis position: 2.2240000
Arabidopsis identities: 0.622
Best GenBank protein hit: AAC78535.1
Evalue: 1.5e-58
Identities: 0.645
Description: "putative embryo-abundant protein [Arabidopsis thaliana]/ 2nd,e-41, embryo-abundant protein [Picea glauca]"
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TMEAV13TH
Arabidopsis best BAC match: AC005662.2
Arabidopsis position: 2.2240000
Arabidopsis identities: 0.622
Best GenBank protein hit: AAC78535.1
Evalue: 1.5e-58
Identities: 0.645
Description: "putative embryo-abundant protein [Arabidopsis thaliana]/ 2nd,e-41, embryo-abundant protein [Picea glauca]"
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T0954 was used as an overgo probe on plate 7 [well C8]
Plausible BAC Matches: P308B07, P303H13
Overgo Sequences
A sequence
TGGGATGTTGGTACTGGTAGTGGC
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B sequence
AAGATTGAGCAGCCTGGCCACTAC
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AB sequence
TGGGATGTTGGTACTGGTAGTGGCCAGGCT
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Marker sequence
TTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGT
AGTGGCCAGGCTGCTCAATCTTTAGCTAAGCTTTACAAGAATGTGATAGC TACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATG TTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACA AAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAAT GCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCA AGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATA AACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGG ACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTA TTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGG |
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