SGN Marker T0964

SGN-M1685
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis

SynonymsNone
Locus associationsNone
COS information 
MIPS Category: 98
Tomato EST read: TMEAW27TH
Arabidopsis best BAC match: AB006697.1
Arabidopsis position: 5.0150000
Arabidopsis identities: 0.933
Best GenBank protein hit: BAB10014.1
Evalue: 2.5e-68
Identities: 0.934
Description: GTP-binding protein LepA homolog [Arabidopsis thaliana]
Comment: compare with TMEAU34TH
More information about COS markers can be found on the COS markers page.
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 39883)
Chromosome
4
Position
50.00 cM
Confidence
I
Protocol
RFLP


Tomato-EXPEN 2000
Overgo hybridization and physical mapping 
T0964 was used as an overgo probe on plate 9 [well B1]

Plausible BAC Matches:   None

 Overgo Sequences

A sequence
TGCTGCATGTGAAGGTGCACTACT
B sequence
GGACGCATCAACTACAAGTAGTGC
AB sequence
TGCTGCATGTGAAGGTGCACTACTTGTAGT
Marker sequence
AAAGCAAACGCGGCGACGGAGCTCATTCCGTACGACGGAGGCGGCAACGG
AGGCGTAGTAGCTTGCGTGTGGATTGCCAAGCAGCTGCGACTGACCTCGA
AGCCACAGCTCGCGCCGGGAAAGACCGTCTGTTGAAGGTACCAATATCAA
ATATAAGGAATTTCTCAATAATAGCACATATTGATCACGGGAAATCAACG
TTGGCAGATAAGTTGCTGCAAATGACGGGAACCGTAGAGAGCCGAGACAT
GAAGGAACAGTTTCTAGATAATATGGATTTGGAGAGAGAAAGAGGCATCA
CTATCAAATTGCAGGCTGCTCGAATGCGTTTCATTTATGAAAATGAGCCA
TATTGCCTTAATCTGATTGACACTCCAGGTCATGTAGATTTCTCGTATGA
GGTCTCTCGGTCTCTTGCTGCATGTGAAGGTGCACTACTTGTAGTTGATG
CGTCCCAGGGAGTAGAGGCGCAAACCCTGGCTAATGTGTATTTAGCATTG
GAAAACAATCTTGAGATCATCCCGGTTT
Genomic location of T0964  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D1685 marker 1685
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