SGN Marker T1048
SGN-M1724
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TFBAA15THB
Arabidopsis best BAC match: AC005275.1
Arabidopsis position: 4.0190000
Arabidopsis identities: 0.729
Best GenBank protein hit: AAD11582.1
Evalue: 3.9e-78
Identities: 0.688
Description: GH3-like protein [Arabidopsis thaliana]
Comment: GH3 is cotton lipid transfer protein
More information about COS markers can be found on the COS markers page.
Tomato EST read: TFBAA15THB
Arabidopsis best BAC match: AC005275.1
Arabidopsis position: 4.0190000
Arabidopsis identities: 0.729
Best GenBank protein hit: AAD11582.1
Evalue: 3.9e-78
Identities: 0.688
Description: GH3-like protein [Arabidopsis thaliana]
Comment: GH3 is cotton lipid transfer protein
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1048 was used as an overgo probe on plate 16 [well B6]
Plausible BAC Matches: None
Overgo Sequences
A sequence
TTCGGCGGATTCTTGAACTCAACC
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B sequence
AGGTACTCAACACCATGGTTGAGT
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AB sequence
TTCGGCGGATTCTTGAACTCAACCATGGTG
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Marker sequence
GACTAGATAAGTCCAATTATTACACTGACACTGATGAAATGATCAATTGG
TTCGAAAAATCCGCCGAAAATGCTGCCGCTGTACAGCGGCAGACGCTTCG GCGGATTCTTGAACTCAACCATGGTGTTGAGTACCTAAAAAAATGGCTTG GAGATATTAGACTTCAAGATGAAAATGCTATGGAATCACTTTATGCTACT ATGGTTCCTCTTGCTTCTCATGCAGATTTTGAGCCTTATATACATAGAAT TGCTGATGGTGAAAAAGCTCCTTTACTCACTCAAGACCCTATGAGAACTT TGTCCTTAAGTTCTGGAACCACAGAGGGAAGACAGAAATTTGTACCATTT ACTCATCATAGCTCCCAAACAACTCTTCAAATTTTCAAATTGGCAGCAGC TTATAGATCAAGGATTTATTCAATAAGAGAAGGTGGAAAAGTTCTTGAAT TTATATATAGTAGCAAACAAACCAAAACAAAAGGGGGATTAATAGCAGGA ACAGCCACAACACATTATTATGCTAGTGAAGAATTCAAGATTAAACAACA ACACACAAAGTCTTTTACTTGTAGCCCTGAGGAAGTTATTTCAAGTGGAG ATTATAAACAATCAACATATTGGCATCTACTT |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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