SGN Marker T1054

SGN-M1730
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis

SynonymsNone
Locus associationsNone
COS information 
MIPS Category: 99
Tomato EST read: TFBAA51THB
Arabidopsis best BAC match: AL050400.1
Arabidopsis position: 4.1310000
Arabidopsis identities: 0.803
Best GenBank protein hit: CAB81375.1
Evalue: 1.1e-49
Identities: 0.818
Description: putative protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 39477)
Chromosome
4
Position
56.00 cM
Confidence
I
Protocol
RFLP


Tomato-EXPEN 2000
Overgo hybridization and physical mapping 
T1054 was used as an overgo probe on plate 7 [well D6]

Plausible BAC Matches:   None

 Overgo Sequences

A sequence
ATTCAGCCATGCAAGCTGTCAAAG
B sequence
GGTGAAAAGGAAGAAGCTTTGACA
AB sequence
ATTCAGCCATGCAAGCTGTCAAAGCTTCTT
Marker sequence
AAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAG
CTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACC
AGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAA
CCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGG
TTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTT
GATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGC
TGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCAC
ATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAAT
GAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCC
ACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATC
ATGGTTGGAGCTTTAATGGAGCTGGTGATTGGAAGTTGATCCCTCAAGCT
CCTAGGGATGGCCCTCAGGTTCATACGTCCAAAA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of T1054  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D1730 marker 1730
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)