SGN Marker T1118

SGN-M1775
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis

SynonymsNone
Locus associationsNone
COS information 
MIPS Category: 1.03.01
Tomato EST read: TFBBA94TH
Arabidopsis best BAC match: AC000132.1
Arabidopsis position: 1.0270000
Arabidopsis identities: 0.785
Best GenBank protein hit: AAB60737.1
Evalue: 2.2e-30
Identities: 0.510
Description: Identical to A. thaliana PUR2 (gb|X74766). ESTs [Arabidopsis thaliana]
Comment: glycinamide ribonucleotide synthetase: one of three purine biosynthetic enzymes
More information about COS markers can be found on the COS markers page.
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 39507)
Chromosome
1
Position
129.00 cM
Confidence
CF(LOD3)
Protocol
RFLP


Tomato-EXPEN 2000
Overgo hybridization and physical mapping 
T1118 was used as an overgo probe on plate 8 [well G2]

Plausible BAC Matches:   P102N10

 Non-Plausible BAC matches

P026N10,   P315K20,   P024O06,   P201L04,   P307M14

 Overgo Sequences

A sequence
TGGTAATTGGAGGAGGTGGGAGAG
B sequence
TGACAAAGCGCATGCTCTCTCCCA
AB sequence
TGGTAATTGGAGGAGGTGGGAGAGAGCATG
Marker sequence
TGGCATGTATGTCACTCAATATAGGAGCTGCTTCTGCTTTGAAGTTTGTA
AGCAATTCCCAAAATCATCCAGTAAAGCTGTTCTCGGCTAAAGAACAACG
TTGTTCCAACTTCAGTTCCAGCAATTGGGGTTGTTTCAGTCTTCGAGTTC
GTCGGAGTTCTTGCCTTCGTTTTGATACACAAAAATCTTTCGCCGTTTTC
AACAGCCTTCCAGTGGATAATAGCAACCCCAAAGAAAGTGTGGTTGTCTT
GGTAATTGGAGGAGGTGGGAGAGAGCATGCGCTTTGTCATGCTTTGAGGC
GATCCCCTTCTTGTGACGCTATTTTCTGTGCACCGGGTAATGCTGGAATT
TCCAGCTCAGGTGATGCGACTTGTATATCAGACCTTGATGTTTTAGATAG
TTCAGCTGTGATTGCTTTCTGTCCTAAATGGGGAGTTGGAC
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of T1118  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D1775 marker 1775
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