SGN Marker T1179
SGN-M1817
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TPTAA10TV
Arabidopsis best BAC match: AL021811.1
Arabidopsis position: 4.1640000
Arabidopsis identities: 0.605
Best GenBank protein hit: CAB79937.1
Evalue: 5.4e-32
Identities: 0.503
Description: putative protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAA10TV
Arabidopsis best BAC match: AL021811.1
Arabidopsis position: 4.1640000
Arabidopsis identities: 0.605
Best GenBank protein hit: CAB79937.1
Evalue: 5.4e-32
Identities: 0.503
Description: putative protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1179 was used as an overgo probe on plate 12 [well H1]
Plausible BAC Matches: P058G17, P175H12, P318A17, P295B20, P144L10, P121J06, P308A11, P006H20, P126D04, P142L01, P023I09, P086F10, P200H14, P282E23, P046H05, P208H09, P317M04, P052K20, P323O07, P029N03, P261J09, P104P18, P223I24, P123K15, P175J15, P049M07, P335P05
Overgo Sequences
A sequence
GCTAGAGACATTCGCTGCAGTTTC
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B sequence
GTTGGTTGACATCCCAGAAACTGC
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AB sequence
GCTAGAGACATTCGCTGCAGTTTCTGGGAT
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Marker sequence
CACATACAAGGAGAAATGGAGCAATTATAAACTTGCATCGGGGAAGAGTT
AAAACAGCAAACAAATATCCTATGCTCATTCGCAACTGTACGAAAGCATA TGGTTACAAAGATGTGTAGAGAACTATCATTAATATCATGAAAATCTACT GGGGGCATAAAATACCAGCTTCCTTCACCAGCTTCTCACTCAAAGCTGAA AGTTGTGCCATCTCTGTATAAACTTCAGCAAGACATTCAAAACTGCTAGA GACATTCGCTGCAGTTTCTGGGATGTCAACCAACCAAAGGCTGCTGTCAT AGTCAGCCTCAATGGTCAAACTAGCTCTATTCAAAAGGCCACGGCTGAAT TCAGCGAGTTTCCGGAGAGCACTGGTTGCAGCTTCAACTTCCAATTGAGC TCCTTCAAATTGGAGCTTTTCAACTGCCAGATCTCCAGTGCTCTTTTCAC CTGTTCTTTCCTGTGCCAAAGCATAAAGTTGCCTTACGCCATCTGCATCT CGGGTCATTTCCTTCATTTTATTTATTTCTTCCTCCCTATCATTTAATTT TTGACAAACTATTTTGAGCTCCTGCTCTTTGAGTTTAAGAGCCCTTTGTG CTGCAAGAGAATCCATTTCT |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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