SGN Marker T1185
SGN-M1822
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TPTAA24TH
Arabidopsis best BAC match: AC009322.1
Arabidopsis position: 1.1550000
Arabidopsis identities: 0.758
Best GenBank protein hit: AAD55468.1
Evalue: 2.1e-86
Identities: 0.758
Description: Hypothetical protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAA24TH
Arabidopsis best BAC match: AC009322.1
Arabidopsis position: 1.1550000
Arabidopsis identities: 0.758
Best GenBank protein hit: AAD55468.1
Evalue: 2.1e-86
Identities: 0.758
Description: Hypothetical protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Eggplant-COSII |
| ![]() Tomato-EXPEN 2000 |
| ![]() Eggplant-LXM 2002 |
Overgo hybridization and physical mapping |
T1185 was used as an overgo probe on plate 14 [well C1]
Plausible BAC Matches: P231A14, P198C21, P172I12, P009J11, P285J23, P304B15, P185A15, P282O12, P288J14, P050N24, P120H16
Overgo Sequences
A sequence
TGCTCTAGTCGATGCTCCACAAAC
|
B sequence
ATTCATCGAGAAGCCGGTTTGTGG
|
AB sequence
TGCTCTAGTCGATGCTCCACAAACCGGCTT
|
Marker sequence
GGTTATAATGTCGGATTCCGGTGCACCTTCTGCTCTAGTCGATGCTCCAC
AAACCGGCTTCTCGATGAATAACAATCGTGCACGAACCGATCCTCGTGAG CAAGAAGCCGTTTACGACATTATGAGGGCTACGGGGAACGATTGGGCCAC CGATATCCCTGATGTTTGTCGTGGTCGATGGCATGGTATTGAGTGCATGC CGGATAATGACAATGTGTACCATGTTGTCTCACTTTCCTTCGGTGCATTG TCCGATGACACAGCGTTTCCTACGTGTGACTCGACTCATTCCTTCATTTC ACCTTCAGTTAGGAAACTTCCACACCTTCGAATTTTGTTCTTCTATCGTT GCTTTAGTAACAATCCTCAGCCCATTCCAGGATTTTTAGCCCAATTAGGG CCCACTTTGCAAACACTAGTTTTAAGGGAAAATGGGTTCACAGGGCCCAT TCCTAATGAATTGGGTAACCTAACCCGTTTGAGAGTTCTAGATCTTCACA AGAACAATCTTAATGGTTCAATACCCATCTCTCTGGGTCGGATCACCGGT TTGAGGTCATTAGATTTGAGCGACAACAAACTAACCGGTTCTATTCCGAG TTTAACTTT |
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User comments |
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