SGN Marker T1200
SGN-M1828
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TPTAA67TV
Arabidopsis best BAC match: AC007660.2
Arabidopsis position: 2.2210000
Arabidopsis identities: 0.815
Best GenBank protein hit: AAD32803.1
Evalue: 2.3e-54
Identities: 0.761
Description: unknown protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAA67TV
Arabidopsis best BAC match: AC007660.2
Arabidopsis position: 2.2210000
Arabidopsis identities: 0.815
Best GenBank protein hit: AAD32803.1
Evalue: 2.3e-54
Identities: 0.761
Description: unknown protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1200 was used as an overgo probe on plate 8 [well G7]
Plausible BAC Matches: P153P19
Overgo Sequences
A sequence
ATCTCTCGAACTGGCTTTGTCGAG
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B sequence
AAGGAAAGGGCAAGAGCTCGACAA
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AB sequence
ATCTCTCGAACTGGCTTTGTCGAGCTCTTG
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Marker sequence
GAAAAATCCAAACCAATCCGGTCATGTATACCCCTACTAGTGACCTTTAT
TTATTTTCAAAACAGTAACTGCCATTCATAGAAATGTTACTTTTAAACTT TAGTTCCTACATAAGACGGAAAATCGAAAAATGGTACAAAACAAGTCCAA TTCTTAGGCCGCGAGCATGACTATAACTATAACGATTCAGACATCTGAGT AGCAGAATTCACGTTGGTATCCACCGTCTTTGCTGGTCTGCGGCCCTTGT CTGGGCCACCAATGATACCCCATCTCTCGAACTGGCTTTGTCGAGCTCTT GCCCTTTCCTTTTCTTCCTCAGATTTTGATGCAAAGCAGTAGGGACAAGA GACGGCATACTCCCATTCTGGGGATTCCATATCAGCATCGCTCACTGGTT TCTTGCATCCATAGCAAAGTTTGAATGTTCCCTGTACCAAACCATGCTCA ACAGAAACTCGTTTGTCAAATACAAAGCATTCCCCCTCCCAAAGGCTCTC TGTCTTGGGAACTTCCTCCAGGTACCTTAAAATCCCACCTTCTAGATGAT AAACCTCATCAAAACCTTTGGCGAGGAGAAAACTNGAAGCTTTCTCGCAT CGAATTCCACCTGTACAGTACATT |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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