SGN Marker T1241
SGN-M1858
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 1.02
Tomato EST read: TPTAD53TH
Arabidopsis best BAC match: AB006704.1
Arabidopsis position: 5.0190000
Arabidopsis identities: 0.781
Best GenBank protein hit: BAB08697.1
Evalue: 6.7e-43
Identities: 0.713
Description: polyamine oxidase [Arabidopsis thaliana]
Comment: "Plant PAOs catalyse the oxidation of polyamine substrates spermidine and spermine producing propane-1,3-diamine and 1-pyrroline or 1-(3-aminopropyl)pyrrolinium and H2O2."
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAD53TH
Arabidopsis best BAC match: AB006704.1
Arabidopsis position: 5.0190000
Arabidopsis identities: 0.781
Best GenBank protein hit: BAB08697.1
Evalue: 6.7e-43
Identities: 0.713
Description: polyamine oxidase [Arabidopsis thaliana]
Comment: "Plant PAOs catalyse the oxidation of polyamine substrates spermidine and spermine producing propane-1,3-diamine and 1-pyrroline or 1-(3-aminopropyl)pyrrolinium and H2O2."
More information about COS markers can be found on the COS markers page.
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| ![]() Eggplant-COSII |
| ![]() Tomato-EXPEN 2000 |
| ![]() Eggplant-LXM 2002 |
Overgo hybridization and physical mapping |
T1241 was used as an overgo probe on plate 9 [well D8]
Plausible BAC Matches: None
Overgo Sequences
A sequence
ACAGTGGACTCAAGCTCAATACGG
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B sequence
TGCACTTCCCGAACAACCGTATTG
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AB sequence
ACAGTGGACTCAAGCTCAATACGGTTGTTC
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Marker sequence
GATCACAGTGGGAAGATATTTCCGAGTGGAATATTCGGCGGACTCGTATA
AGAAAGCGGTGGACTCAGCAATTCAGAAACTCAGAAGCCAGGAAGGAAAT CATAATGAAGACACCGACGATGCTGCTGAAACGCCGTCAACTCCAAAAAC ACCAATAGAGCTGGCGATTGATTTCATTCTTCATGATTTTGAAATGGCAG AAGTTGAGCCAATATCAACCTATGTAGATTTTGGTGAAAGAGAATTTCTG GTTGCTGATGAAAGAGGATATGAACATTTGCTTTATAAAATGGCAGAAAA TTTTCTTCTTACCTGTGAGGGTGAAATTATGGACAGTGGACTCAAGCTCA ATACGGTTGTTCGGGAAGTGCACCACTCGAGAAACGGGGATTTGGTGACA AC |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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