SGN Marker T1358
SGN-M1950
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 9.01
Tomato EST read: TPTAP09TH
Arabidopsis best BAC match: AL034567.1
Arabidopsis position: 4.1650000
Arabidopsis identities: 0.855
Best GenBank protein hit: AAF89961.1
Evalue: 5e-120
Identities: 0.909
Description: cellulose synthase-1 [Zea mays]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAP09TH
Arabidopsis best BAC match: AL034567.1
Arabidopsis position: 4.1650000
Arabidopsis identities: 0.855
Best GenBank protein hit: AAF89961.1
Evalue: 5e-120
Identities: 0.909
Description: cellulose synthase-1 [Zea mays]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1358 was used as an overgo probe on plate 13 [well B3]
Plausible BAC Matches: P050P21, P292D13, P334K16
Overgo Sequences
A sequence
ATGCATGCACGAGGATGGTATTCC
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B sequence
GAGGCATGCAATAGAGGGAATACC
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AB sequence
ATGCATGCACGAGGATGGTATTCCCTCTAT
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Marker sequence
GCTTGGAGAAGCTGTTTGGTCAATCACCAGTGTTTATTGCTGCCACATTT
ATGGAACAAGGAGGCATTCCTGCATCCACTAATCCTGCATCTCTTTTGAA AGAAGCAATTCATGTTATTAGCTGTGGCTACGAGGACAAGACTGAATGGG GAAAAGAGATTGGGTGGATATATGGATCTGTCACTGAAGATATTTTGACT GGGTTTAAGATGCATGCACGAGGATGGTATTCCCTCTATTGCATGCCTCC TCGACCAGCATTTAAAGGGTCTGCTCCTATCAATCTTTCTGATCGTTTAA ACCAGGTGCTCCGGTGGGCTTTGGGTTCTGTTGAAATCCTGTTGAGTAAG CATTGCCCAATATGGTATGGCTACAGTGGCAGATTGATGCTTCTGGAGAG ATTAGCATATATTAATACAATCGTCTATCCTCTCACATCTTTACCCTTGC TTGCTTACTGTACGCTTCCTGCCATCTGTCTTCTGACCGGCAAATTTATC ATTCCTGAGATAAGCAACTATGCTGGCATGTGGTTCATTCTACTCTTTCT TTCCATTTTCGCAACTGGTATATTGGAGCTTANGTGGAGTGGTGTGAGTA TTGAAGACTGGTGGAGAAATGAACAGTTCTGGGTCATTGGTGGTACATCG GCTCACTTGTTTGCAGTTTT |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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