SGN Marker T1385
SGN-M1969
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TPTAR17TH
Arabidopsis best BAC match: AL022604.1
Arabidopsis position: 4.1800000
Arabidopsis identities: 0.876
Best GenBank protein hit: CAB80242.1
Evalue: 2e-122
Identities: 0.932
Description: putative protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAR17TH
Arabidopsis best BAC match: AL022604.1
Arabidopsis position: 4.1800000
Arabidopsis identities: 0.876
Best GenBank protein hit: CAB80242.1
Evalue: 2e-122
Identities: 0.932
Description: putative protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1385 was used as an overgo probe on plate 3 [well C3]
Plausible BAC Matches: P127G20, P288C11, P122P10, P221I19, P307O04, P020G17, P244N20, P123A10, P074L15, P288F11, P247P20, P042F02, P284F16, P204J20, P041O24, P231M15, P260A18, P034P08, P288C12, P157J23, P219I17, P216E07, P091I01, P032N15, P248N01, P288D11, P022P21, P176J23, P162J06, P060N11, P109C06
Overgo Sequences
A sequence
AGAGAAGTTTCTCCGCGATTCAGG
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B sequence
TACAACGTGGTTCAGGCCTGAATC
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AB sequence
AGAGAAGTTTCTCCGCGATTCAGGCCTGAA
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Marker sequence
GCAGATGTCTTGTAAGGCCTAGGCCTGCTCCTGCCGATTTTCTTCGTGAT
TGGGGCGCTACGGTTGTCAATGCAGATTTAAGCAAACCTGAAACAATTCC AGCAACATTGGTTGGAGTCCATACAGTTATTGATTGTGCTACTGGACGCC CTGAGGAGCCTATAAAAACTGTAGATTGGGAAGGAAAAGTGGCTCTTATA CAATGTGCAAAAGCCATGGGCATTCAAAAATTTATATTTTTCTCCATTCA CAACTGCGACAAGCATCCTGAAGTTCCTCTGATGGAGATCAAACACTGTA CAGAGAAGTTTCTCCGCGATTCAGGCCTGAACCACGTTGTAATTCGGTTA TGTGGCTTCATGCAGGGCCTTATTGGTCAATATGCAGTGCCTATATTAGA AGAGAAATCTGTATGGGGAACCGATGCTCCCACTCGAATAGCATACATGG ACACCCAAGATATTGCTCGGTTGACATTCATAGCTTTACGCAATGAGAAT ATTAATGGGAAGCTTCTCACTTTTGCTGGGCCTCGGGCATGGACAACCCA AGAGGTGATAACATTGTGCGAGAGACTTGCTGGTCAAGATGCCAATGTGA CTACAGTGCCTGTGTCAGTTTTGCGATTTACACGTCAGCTGACTCGGTTG TTTGAGTGGACGAATGATG |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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